Analysis of interatomic Contacts of Structural Units in PDB entry:
1MPO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MPO entry

There are 3 chains in PDB entry 1MPO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1TRP 421
B
 VAL 1TRP 421
C
 VAL 1TRP 421
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1MPO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
93 95Right-handed 310
Helix 2
2
A
113 115Right-handed 310
Helix 3
3
A
160 162Right-handed 310
Helix 4
4
A
237 239Right-handed 310
Helix 5
5
A
398 400Right-handed 310
Helix 6
6
B
93 95Right-handed 310
Helix 7
7
B
113 115Right-handed 310
Helix 8
8
B
160 162Right-handed 310
Helix 9
9
B
237 239Right-handed 310
Helix 10
10
B
398 400Right-handed 310
Helix 11
11
C
93 95Right-handed 310
Helix 12
12
C
113 115Right-handed 310
Helix 13
13
C
160 162Right-handed 310
Helix 14
14
C
237 239Right-handed 310
Helix 15
15
C
398 400Right-handed 310
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There are 15 sheets in PDB entry 1MPO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 19 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 47first strand
Strand 2
A
2 14anti-parallel
Strand 3
A
407 421anti-parallel
Strand 4
A
362 374anti-parallel
Strand 5
A
339 352anti-parallel
Strand 6
A
320 333anti-parallel
Strand 7
A
303 317anti-parallel
Strand 8
A
284 297anti-parallel
Strand 9
A
267 279anti-parallel
Strand 10
A
226 237anti-parallel
Strand 11
A
211 223anti-parallel
Strand 12
A
185 196anti-parallel
Strand 13
A
165 177anti-parallel
Strand 14
A
138 152anti-parallel
Strand 15
A
124 130anti-parallel
Strand 16
A
99 105anti-parallel
Strand 17
A
80 89anti-parallel
Strand 18
A
57 68anti-parallel
Strand 19
A
40 44anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 254first strand
Strand 2
A
260 262anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 378first strand
Strand 2
A
393 395anti-parallel
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There are 19 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 47first strand
Strand 2
B
2 14anti-parallel
Strand 3
B
407 421anti-parallel
Strand 4
B
362 374anti-parallel
Strand 5
B
339 352anti-parallel
Strand 6
B
320 333anti-parallel
Strand 7
B
303 317anti-parallel
Strand 8
B
284 297anti-parallel
Strand 9
B
267 279anti-parallel
Strand 10
B
226 237anti-parallel
Strand 11
B
211 223anti-parallel
Strand 12
B
185 196anti-parallel
Strand 13
B
165 177anti-parallel
Strand 14
B
138 152anti-parallel
Strand 15
B
124 130anti-parallel
Strand 16
B
99 105anti-parallel
Strand 17
B
80 89anti-parallel
Strand 18
B
57 68anti-parallel
Strand 19
B
40 44anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
252 254first strand
Strand 2
B
260 262anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
376 378first strand
Strand 2
B
393 395anti-parallel
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There are 19 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
41 47first strand
Strand 2
C
2 14anti-parallel
Strand 3
C
407 421anti-parallel
Strand 4
C
362 374anti-parallel
Strand 5
C
339 352anti-parallel
Strand 6
C
320 333anti-parallel
Strand 7
C
303 317anti-parallel
Strand 8
C
284 297anti-parallel
Strand 9
C
267 279anti-parallel
Strand 10
C
226 237anti-parallel
Strand 11
C
211 223anti-parallel
Strand 12
C
185 196anti-parallel
Strand 13
C
165 177anti-parallel
Strand 14
C
138 152anti-parallel
Strand 15
C
124 130anti-parallel
Strand 16
C
99 105anti-parallel
Strand 17
C
80 89anti-parallel
Strand 18
C
57 68anti-parallel
Strand 19
C
40 44anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
252 254first strand
Strand 2
C
260 262anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
376 378first strand
Strand 2
C
393 395anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 53first strand
Strand 2
A
56 60anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 112first strand
Strand 2
A
117 120anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 53first strand
Strand 2
B
56 60anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 112first strand
Strand 2
B
117 120anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
48 53first strand
Strand 2
C
56 60anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
110 112first strand
Strand 2
C
117 120anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il