Analysis of interatomic Contacts of Structural Units in PDB entry:
1MPS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MPS entry

There are 3 chains in PDB entry 1MPS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 ALA 1GLY 281
M
 ALA 1GLY 302
H
 ASP 11SER 250
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 1MPS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
L
7 9Right-handed 310
Helix 2
2
L
33 56Right-handed alpha
Helix 3
3
L
71 73Right-handed 310
Helix 4
4
L
80 82Right-handed 310
Helix 5
5
L
84 111Right-handed alpha
Helix 6
6
L
116 132Right-handed alpha
Helix 7
7
L
134 139Right-handed alpha
Helix 8
8
L
142 144Right-handed 310
Helix 9
9
L
152 164Right-handed alpha
Helix 10
10
L
167 169Right-handed 310
Helix 11
11
L
171 198Right-handed alpha
Helix 12
12
L
209 220Right-handed alpha
Helix 13
13
L
226 249Right-handed alpha
Helix 14
14
L
259 267Right-handed alpha
Helix 15
15
L
270 273Right-handed alpha
Helix 16
16
M
37 41Right-handed alpha
Helix 17
17
M
54 77Right-handed alpha
Helix 18
18
M
82 87Right-handed alpha
Helix 19
19
M
99 101Right-handed 310
Helix 20
20
M
109 111Right-handed 310
Helix 21
21
M
113 140Right-handed alpha
Helix 22
22
M
145 161Right-handed alpha
Helix 23
23
M
163 168Right-handed alpha
Helix 24
24
M
171 173Right-handed 310
Helix 25
25
M
179 193Right-handed alpha
Helix 26
26
M
196 198Right-handed 310
Helix 27
27
M
200 225Right-handed alpha
Helix 28
28
M
227 229Right-handed 310
Helix 29
29
M
234 239Right-handed alpha
Helix 30
30
M
243 256Right-handed alpha
Helix 31
31
M
262 286Right-handed alpha
Helix 32
32
M
294 300Right-handed alpha
Helix 33
33
H
12 36Right-handed alpha
Helix 34
34
H
104 107Right-handed alpha
Helix 35
35
H
110 112Right-handed 310
Helix 36
36
H
134 136Right-handed 310
Helix 37
37
H
193 195Right-handed 310
Helix 38
38
H
210 215Right-handed 310
Helix 39
39
H
227 243Right-handed alpha
Helix 40
40
H
245 247Right-handed 310
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There are 4 sheets in PDB entry 1MPS. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
62 65first strand
Strand 2
H
72 75anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
87 89first strand
Strand 2
H
98 100anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
131 133first strand
Strand 2
H
162 170anti-parallel
Strand 3
H
178 183anti-parallel
Strand 4
H
188 192anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
203 205first strand
Strand 2
H
152 155parallel
Strand 3
H
160 163anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il