Analysis of interatomic Contacts of Structural Units in PDB entry:
1MPY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MPY entry

There are 4 chains in PDB entry 1MPY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 307
B
 MET 1THR 307
C
 MET 1THR 307
D
 MET 1THR 307
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 1MPY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 27Right-handed alpha
Helix 2
2
A
75 88Right-handed alpha
Helix 3
3
A
161 170Right-handed alpha
Helix 4
4
A
222 235Right-handed alpha
Helix 5
5
A
284 291Right-handed 310
Helix 6
6
A
300 303Right-handed 310
Helix 7
7
B
18 27Right-handed alpha
Helix 8
8
B
75 88Right-handed alpha
Helix 9
9
B
161 170Right-handed alpha
Helix 10
10
B
222 235Right-handed alpha
Helix 11
11
B
284 291Right-handed 310
Helix 12
12
B
300 304Right-handed alpha
Helix 13
13
C
18 27Right-handed alpha
Helix 14
14
C
75 87Right-handed alpha
Helix 15
15
C
161 170Right-handed alpha
Helix 16
16
C
222 235Right-handed alpha
Helix 17
17
C
284 291Right-handed 310
Helix 18
18
C
300 303Right-handed alpha
Helix 19
19
D
18 27Right-handed alpha
Helix 20
20
D
75 88Right-handed alpha
Helix 21
21
D
161 170Right-handed alpha
Helix 22
22
D
222 234Right-handed alpha
Helix 23
23
D
248 250Right-handed 310
Helix 24
24
D
284 291Right-handed 310
Helix 25
25
D
300 304Right-handed alpha
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There are 12 sheets in PDB entry 1MPY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 36first strand
Strand 2
A
42 45anti-parallel
Strand 3
A
55 59anti-parallel
Strand 4
A
10 15parallel
Strand 5
A
64 71anti-parallel
Strand 6
A
116 120parallel
Strand 7
A
106 110anti-parallel
Strand 8
A
93 95anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 283first strand
Strand 2
A
175 181parallel
Strand 3
A
189 193anti-parallel
Strand 4
A
201 205anti-parallel
Strand 5
A
154 158parallel
Strand 6
A
211 218anti-parallel
Strand 7
A
263 268parallel
Strand 8
A
252 257anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 8first strand
Strand 2
A
70 72anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 36first strand
Strand 2
B
42 45anti-parallel
Strand 3
B
55 59anti-parallel
Strand 4
B
10 15parallel
Strand 5
B
64 71anti-parallel
Strand 6
B
116 120parallel
Strand 7
B
106 110anti-parallel
Strand 8
B
93 95anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
280 283first strand
Strand 2
B
175 181parallel
Strand 3
B
189 193anti-parallel
Strand 4
B
201 205anti-parallel
Strand 5
B
150 158parallel
Strand 6
B
214 218anti-parallel
Strand 7
B
263 268parallel
Strand 8
B
252 257anti-parallel
Strand 9
B
238 241anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 8first strand
Strand 2
B
70 72anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
32 36first strand
Strand 2
C
41 45anti-parallel
Strand 3
C
55 59anti-parallel
Strand 4
C
10 15parallel
Strand 5
C
64 71anti-parallel
Strand 6
C
116 120parallel
Strand 7
C
106 110anti-parallel
Strand 8
C
93 95anti-parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
280 283first strand
Strand 2
C
175 181parallel
Strand 3
C
189 193anti-parallel
Strand 4
C
201 205anti-parallel
Strand 5
C
150 158parallel
Strand 6
C
214 218anti-parallel
Strand 7
C
263 268parallel
Strand 8
C
252 257anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 8first strand
Strand 2
C
70 72anti-parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
32 36first strand
Strand 2
D
42 45anti-parallel
Strand 3
D
55 59anti-parallel
Strand 4
D
10 15parallel
Strand 5
D
64 71anti-parallel
Strand 6
D
116 120parallel
Strand 7
D
106 110anti-parallel
Strand 8
D
92 95anti-parallel
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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
280 283first strand
Strand 2
D
175 181parallel
Strand 3
D
189 193anti-parallel
Strand 4
D
201 205anti-parallel
Strand 5
D
150 158parallel
Strand 6
D
214 218anti-parallel
Strand 7
D
263 268parallel
Strand 8
D
252 257anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 8first strand
Strand 2
D
70 72anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il