Analysis of interatomic Contacts of Structural Units in PDB entry:
1MQB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MQB entry

There are 2 chains in PDB entry 1MQB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 605PHE 887
B
 LEU 602THR 883
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1MQB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
653 669Right-handed alpha
Helix 2
2
A
700 707Right-handed alpha
Helix 3
3
A
712 733Right-handed alpha
Helix 4
4
A
741 743Right-handed 310
Helix 5
5
A
780 784Right-handed 310
Helix 6
6
A
785 791Right-handed alpha
Helix 7
7
A
795 812Right-handed alpha
Helix 8
8
A
822 832Right-handed alpha
Helix 9
9
A
843 854Right-handed alpha
Helix 10
10
A
863 877Right-handed alpha
Helix 11
11
A
878 883Right-handed 310
Helix 12
12
B
609 611Right-handed 310
Helix 13
13
B
655 668Right-handed alpha
Helix 14
14
B
699 706Right-handed alpha
Helix 15
15
B
712 733Right-handed alpha
Helix 16
16
B
741 743Right-handed 310
Helix 17
17
B
780 784Right-handed 310
Helix 18
18
B
785 790Right-handed alpha
Helix 19
19
B
795 812Right-handed alpha
Helix 20
20
B
822 832Right-handed alpha
Helix 21
21
B
843 854Right-handed alpha
Helix 22
22
B
857 861Right-handed 310
Helix 23
23
B
863 877Right-handed alpha
Helix 24
24
B
878 882Right-handed 310
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There are 5 sheets in PDB entry 1MQB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
613 621first strand
Strand 2
A
626 633anti-parallel
Strand 3
A
640 648anti-parallel
Strand 4
A
688 693anti-parallel
Strand 5
A
678 682anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
698 699first strand
Strand 2
A
745 747anti-parallel
Strand 3
A
753 755anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
613 621first strand
Strand 2
B
626 632anti-parallel
Strand 3
B
641 648anti-parallel
Strand 4
B
688 693anti-parallel
Strand 5
B
678 682anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
735 736first strand
Strand 2
B
762 763anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
745 747first strand
Strand 2
B
753 755anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il