Analysis of interatomic Contacts of Structural Units in PDB entry:
1MQF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MQF entry

There are 2 chains in PDB entry 1MQF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4ARG 52
A
 HIS 54GLU 479
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 1MQF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 44Right-handed alpha
Helix 2
2
A
76 80Right-handed 310
Helix 3
3
A
136 138Right-handed 310
Helix 4
4
A
139 148Right-handed alpha
Helix 5
5
A
157 167Right-handed alpha
Helix 6
6
A
168 170Right-handed 310
Helix 7
7
A
171 179Right-handed alpha
Helix 8
8
A
180 184Right-handed 310
Helix 9
9
A
187 191Right-handed 310
Helix 10
10
A
225 236Right-handed alpha
Helix 11
11
A
238 250Right-handed alpha
Helix 12
12
A
266 270Right-handed 310
Helix 13
13
A
303 308Right-handed alpha
Helix 14
14
A
327 345Right-handed alpha
Helix 15
15
A
348 352Right-handed 310
Helix 16
16
A
393 397Right-handed 310
Helix 17
17
A
411 415Right-handed 310
Helix 18
18
A
419 427Right-handed alpha
Helix 19
19
A
430 446Right-handed alpha
Helix 20
20
A
449 464Right-handed alpha
Helix 21
21
A
464 479Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1MQF.

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 323first strand
Strand 2
A
199 202anti-parallel
Strand 3
A
208 217anti-parallel
Strand 4
A
255 264anti-parallel
Strand 5
A
290 299anti-parallel
Strand 6
A
57 66anti-parallel
Strand 7
A
85 93anti-parallel
Strand 8
A
110 117anti-parallel
Strand 9
A
120 127anti-parallel
Strand 10
A
193 194anti-parallel
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