Analysis of interatomic Contacts of Structural Units in PDB entry:
1MQU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MQU entry

There is 1 chain in PDB entry 1MQU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 438
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 1MQU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 23Right-handed alpha
Helix 2
2
A
34 42Right-handed alpha
Helix 3
3
A
46 50Right-handed 310
Helix 4
4
A
57 73Right-handed alpha
Helix 5
5
A
82 87Right-handed alpha
Helix 6
6
A
94 111Right-handed alpha
Helix 7
7
A
125 131Right-handed alpha
Helix 8
8
A
132 136Right-handed 310
Helix 9
9
A
137 155Right-handed alpha
Helix 10
10
A
166 176Right-handed alpha
Helix 11
11
A
186 212Right-handed alpha
Helix 12
12
A
232 247Right-handed alpha
Helix 13
13
A
247 256Right-handed alpha
Helix 14
14
A
260 271Right-handed alpha
Helix 15
15
A
278 283Right-handed alpha
Helix 16
16
A
327 336Right-handed alpha
Helix 17
17
A
365 385Right-handed alpha
Helix 18
18
A
402 409Right-handed 310
Helix 19
19
A
426 438Right-handed alpha
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There are 3 sheets in PDB entry 1MQU. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 16first strand
Strand 2
A
76 80parallel
Strand 3
A
114 120parallel
Strand 4
A
160 165parallel
Strand 5
A
216 222parallel
Strand 6
A
288 292parallel
Strand 7
A
345 349parallel
Strand 8
A
389 395parallel
Strand 9
A
12 16parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 227first strand
Strand 2
A
297 298parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 416first strand
Strand 2
A
423 425anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il