Analysis of interatomic Contacts of Structural Units in PDB entry:
1MRD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MRD entry

There are 2 chains in PDB entry 1MRD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 ASP 1ARG 211
H
 VAL 2PRO 227
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 1MRD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
L
79 83Right-handed 310
Helix 2
2
L
121 127Right-handed alpha
Helix 3
3
L
183 189Right-handed alpha
Helix 4
4
H
61 64Right-handed 310
Helix 5
5
H
83 87Right-handed 310
Helix 6
6
H
163 165Right-handed 310
Helix 7
7
H
196 199Right-handed 310
Helix 8
8
H
213 216Right-handed 310
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There are 8 sheets in PDB entry 1MRD. Click on sheet of interest to get list of strands forming it: B1, B2, B3, B4, B5, B6, B7, B8,

There are 4 strands in B1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
2 7first strand
Strand 2
L
17 25anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 67anti-parallel
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There are 6 strands in B2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
97 107parallel
Strand 3
L
84 91anti-parallel
Strand 4
L
32 38anti-parallel
Strand 5
L
42 50anti-parallel
Strand 6
L
53 56anti-parallel
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There are 4 strands in B3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
16 25anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
67 72anti-parallel
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There are 6 strands in B4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
8 14first strand
Strand 2
H
102 112parallel
Strand 3
H
88 94anti-parallel
Strand 4
H
32 40anti-parallel
Strand 5
H
45 52anti-parallel
Strand 6
H
55 60anti-parallel
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There are 4 strands in B5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
114 121first strand
Strand 2
L
129 140anti-parallel
Strand 3
L
172 182anti-parallel
Strand 4
L
159 167anti-parallel
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There are 3 strands in B6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
143 151first strand
Strand 2
L
190 198anti-parallel
Strand 3
L
203 211anti-parallel
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There are 4 strands in B7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
120 124first strand
Strand 2
H
137 146anti-parallel
Strand 3
H
184 194anti-parallel
Strand 4
H
171 179anti-parallel
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There are 3 strands in B8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
153 162first strand
Strand 2
H
205 212anti-parallel
Strand 3
H
217 223anti-parallel
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