Analysis of interatomic Contacts of Structural Units in PDB entry:
1MRI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MRI entry

There is 1 chain in PDB entry 1MRI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1ILE 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 1MRI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
H1
A
10 25Right-handed alpha
Helix 2
H2
A
85 94Right-handed alpha
Helix 3
H3
A
111 119Right-handed alpha
Helix 4
H4
A
128 141Right-handed alpha
Helix 5
H5
A
145 163Right-handed alpha
Helix 6
H6
A
164 175Right-handed alpha
Helix 7
H7
A
184 201Right-handed alpha
Helix 8
H8
A
230 236Right-handed alpha
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There are 3 sheets in PDB entry 1MRI. Click on sheet of interest to get list of strands forming it: S1, S2, S3,

There are 6 strands in S1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 5first strand
Strand 2
A
47 53parallel
Strand 3
A
57 66anti-parallel
Strand 4
A
70 76anti-parallel
Strand 5
A
79 85anti-parallel
Strand 6
A
101 110parallel
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There are 2 strands in S2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 128first strand
Strand 2
A
177 183anti-parallel
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There are 2 strands in S3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 215first strand
Strand 2
A
223 229anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il