Analysis of interatomic Contacts of Structural Units in PDB entry:
1MRP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MRP entry

There is 1 chain in PDB entry 1MRP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1LYS 309
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 1MRP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 24Right-handed alpha
Helix 2
2
A
35 48Right-handed alpha
Helix 3
3
A
59 67Right-handed 310
Helix 4
4
A
76 82Right-handed alpha
Helix 5
5
A
114 116Right-handed 310
Helix 6
6
A
121 124Right-handed 310
Helix 7
7
A
127 129Right-handed 310
Helix 8
8
A
140 153Right-handed alpha
Helix 9
9
A
155 168Right-handed alpha
Helix 10
10
A
175 183Right-handed alpha
Helix 11
11
A
194 204Right-handed 310
Helix 12
12
A
206 208Right-handed 310
Helix 13
13
A
221 223Right-handed 310
Helix 14
14
A
239 250Right-handed alpha
Helix 15
15
A
252 261Right-handed alpha
Helix 16
16
A
280 283Right-handed 310
Helix 17
17
A
293 305Right-handed alpha
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There are 3 sheets in PDB entry 1MRP. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 32first strand
Strand 2
A
2 6parallel
Strand 3
A
53 56parallel
Strand 4
A
225 232anti-parallel
Strand 5
A
96 102anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 193first strand
Strand 2
A
103 108anti-parallel
Strand 3
A
211 214anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 135first strand
Strand 2
A
169 171parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il