Analysis of interatomic Contacts of Structural Units in PDB entry:
1MSW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1MSW entry

There are 4 chains in PDB entry 1MSW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
T	G 130	T 111
N	T 14	C 30
R	G 10	A 1
D	ASN 2	ALA 883

There are 38 helices in PDB entry 1MSW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	D	11	15	Right-handed 310
Helix 2	2	D	17	25	Right-handed alpha
Helix 3	3	D	29	60	Right-handed alpha
Helix 4	4	D	63	67	Right-handed 310
Helix 5	5	D	70	95	Right-handed alpha
Helix 6	6	D	110	129	Right-handed alpha
Helix 7	7	D	133	157	Right-handed alpha
Helix 8	8	D	161	166	Right-handed alpha
Helix 9	9	D	167	173	Right-handed alpha
Helix 10	10	D	175	190	Right-handed alpha
Helix 11	11	D	207	224	Right-handed alpha
Helix 12	12	D	247	262	Right-handed alpha
Helix 13	13	D	303	308	Right-handed alpha
Helix 14	14	D	313	325	Right-handed alpha
Helix 15	15	D	331	342	Right-handed alpha
Helix 16	16	D	378	403	Right-handed alpha
Helix 17	17	D	437	443	Right-handed alpha
Helix 18	18	D	452	468	Right-handed alpha
Helix 19	19	D	474	485	Right-handed alpha
Helix 20	20	D	485	495	Right-handed alpha
Helix 21	21	D	495	500	Right-handed alpha
Helix 22	22	D	501	505	Right-handed 310
Helix 23	23	D	507	525	Right-handed alpha
Helix 24	24	D	540	551	Right-handed alpha
Helix 25	25	D	554	559	Right-handed alpha
Helix 26	26	D	569	587	Right-handed alpha
Helix 27	27	D	612	622	Right-handed alpha
Helix 28	28	D	626	636	Right-handed alpha
Helix 29	29	D	637	640	Right-handed 310
Helix 30	30	D	642	654	Right-handed alpha
Helix 31	31	D	654	661	Right-handed alpha
Helix 32	32	D	669	689	Right-handed alpha
Helix 33	33	D	689	708	Right-handed alpha
Helix 34	34	D	770	802	Right-handed alpha
Helix 35	35	D	817	819	Right-handed 310
Helix 36	36	D	820	839	Right-handed alpha
Helix 37	37	D	840	850	Right-handed alpha
Helix 38	38	D	871	877	Right-handed 310

There are 8 sheets in PDB entry 1MSW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	227	230	first strand
Strand 2	D	243	246	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	297	298	first strand
Strand 2	D	418	421	parallel
Strand 3	D	426	428	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	328	330	first strand
Strand 2	D	444	446	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	450	451	first strand
Strand 2	D	529	530	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	534	537	first strand
Strand 2	D	813	816	anti-parallel
Strand 3	D	808	809	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	710	711	first strand
Strand 2	D	718	720	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	725	728	first strand
Strand 2	D	734	737	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	747	748	first strand
Strand 2	D	754	755	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1MSW

Analysis of interatomic Contacts of Structural Units in PDB entry:
1MSW