Analysis of interatomic Contacts of Structural Units in PDB entry:
1MV5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1MV5 entry

There are 4 chains in PDB entry 1MV5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 342	GLY 583
B	MET 1342	GLY 1583
C	MET 2342	GLY 2583
D	MET 3342	VAL 3582

There are 40 helices in PDB entry 1MV5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	381	390	Right-handed alpha
Helix 2	2	A	433	437	Right-handed alpha
Helix 3	3	A	446	458	Right-handed alpha
Helix 4	4	A	468	471	Right-handed 310
Helix 5	5	A	482	498	Right-handed alpha
Helix 6	6	A	517	528	Right-handed alpha
Helix 7	7	A	538	545	Right-handed alpha
Helix 8	8	A	561	569	Right-handed alpha
Helix 9	9	A	569	578	Right-handed alpha
Helix 10	10	B	1381	1390	Right-handed alpha
Helix 11	11	B	1406	1410	Right-handed 310
Helix 12	12	B	1433	1439	Right-handed alpha
Helix 13	13	B	1446	1457	Right-handed alpha
Helix 14	14	B	1459	1464	Right-handed alpha
Helix 15	15	B	1484	1498	Right-handed alpha
Helix 16	16	B	1513	1528	Right-handed alpha
Helix 17	17	B	1538	1545	Right-handed alpha
Helix 18	18	B	1561	1569	Right-handed alpha
Helix 19	19	B	1569	1579	Right-handed alpha
Helix 20	20	C	2381	2390	Right-handed alpha
Helix 21	21	C	2411	2418	Right-handed alpha
Helix 22	22	C	2434	2439	Right-handed alpha
Helix 23	23	C	2445	2457	Right-handed alpha
Helix 24	24	C	2459	2465	Right-handed alpha
Helix 25	25	C	2482	2498	Right-handed alpha
Helix 26	26	C	2519	2527	Right-handed alpha
Helix 27	27	C	2538	2545	Right-handed alpha
Helix 28	28	C	2561	2569	Right-handed alpha
Helix 29	29	C	2569	2578	Right-handed alpha
Helix 30	30	D	3381	3390	Right-handed alpha
Helix 31	31	D	3410	3418	Right-handed alpha
Helix 32	32	D	3432	3438	Right-handed alpha
Helix 33	33	D	3446	3455	Right-handed alpha
Helix 34	34	D	3459	3465	Right-handed alpha
Helix 35	35	D	3468	3472	Right-handed 310
Helix 36	36	D	3483	3495	Right-handed alpha
Helix 37	37	D	3517	3528	Right-handed alpha
Helix 38	38	D	3538	3544	Right-handed alpha
Helix 39	39	D	3561	3569	Right-handed alpha
Helix 40	40	D	3571	3579	Right-handed alpha

There are 13 sheets in PDB entry 1MV5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	366	first strand
Strand 2	A	343	350	anti-parallel
Strand 3	A	400	402	anti-parallel
Strand 4	A	405	406	anti-parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	421	422	first strand
Strand 2	A	501	505	parallel
Strand 3	A	531	535	parallel
Strand 4	A	370	375	parallel
Strand 5	A	548	552	parallel
Strand 6	A	555	556	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	431	432	first strand
Strand 2	A	473	474	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1359	1366	first strand
Strand 2	B	1343	1350	anti-parallel
Strand 3	B	1397	1402	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1501	1503	first strand
Strand 2	B	1531	1533	parallel
Strand 3	B	1371	1375	parallel
Strand 4	B	1547	1552	parallel
Strand 5	B	1555	1560	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1431	1432	first strand
Strand 2	B	1473	1474	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2359	2366	first strand
Strand 2	C	2343	2350	anti-parallel
Strand 3	C	2399	2402	anti-parallel
Strand 4	C	2405	2406	anti-parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2419	2423	first strand
Strand 2	C	2501	2505	parallel
Strand 3	C	2531	2535	parallel
Strand 4	C	2371	2375	parallel
Strand 5	C	2547	2552	parallel
Strand 6	C	2555	2560	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2431	2432	first strand
Strand 2	C	2473	2474	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3343	3345	first strand
Strand 2	D	3400	3402	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3348	3350	first strand
Strand 2	D	3359	3362	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3373	3375	first strand
Strand 2	D	3548	3552	parallel
Strand 3	D	3555	3558	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3501	3503	first strand
Strand 2	D	3531	3533	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1MV5

Analysis of interatomic Contacts of Structural Units in PDB entry:
1MV5