Analysis of interatomic Contacts of Structural Units in PDB entry:
1MVD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MVD entry

There are 4 chains in PDB entry 1MVD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 202
B
 MET 1LEU 202
C
 T 1 A 20
D
 T 1 A 20
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 1MVD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 23Right-handed alpha
Helix 2
2
A
27 36Right-handed alpha
Helix 3
3
A
39 54Right-handed alpha
Helix 4
4
A
101 105Right-handed 310
Helix 5
5
A
120 124Right-handed 310
Helix 6
6
B
5 23Right-handed alpha
Helix 7
7
B
27 36Right-handed alpha
Helix 8
8
B
39 54Right-handed alpha
Helix 9
9
B
101 105Right-handed 310
Helix 10
10
B
120 124Right-handed 310
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There are 3 sheets in PDB entry 1MVD. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 58first strand
Strand 2
A
66 67anti-parallel
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There are 25 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 79first strand
Strand 2
A
111 114parallel
Strand 3
A
130 135anti-parallel
Strand 4
A
186 197anti-parallel
Strand 5
A
144 149anti-parallel
Strand 6
A
152 161anti-parallel
Strand 7
A
164 168anti-parallel
Strand 8
A
177 180anti-parallel
Strand 9
A
164 168anti-parallel
Strand 10
A
152 161anti-parallel
Strand 11
A
144 149anti-parallel
Strand 12
A
186 197anti-parallel
Strand 13
B
186 197anti-parallel
Strand 14
B
144 149anti-parallel
Strand 15
B
152 161anti-parallel
Strand 16
B
164 168anti-parallel
Strand 17
B
177 180anti-parallel
Strand 18
B
164 168anti-parallel
Strand 19
B
152 161anti-parallel
Strand 20
B
78 83anti-parallel
Strand 21
B
92 96anti-parallel
Strand 22
B
78 83anti-parallel
Strand 23
B
111 116parallel
Strand 24
B
130 134parallel
Strand 25
B
186 197anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 58first strand
Strand 2
B
66 67anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il