Analysis of interatomic Contacts of Structural Units in PDB entry:
1MW5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MW5 entry

There are 2 chains in PDB entry 1MW5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3ASN 164
B
 GLU 3ASN 164
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1MW5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 12Right-handed alpha
Helix 2
2
A
19 37Right-handed alpha
Helix 3
3
A
47 61Right-handed alpha
Helix 4
4
A
69 78Right-handed alpha
Helix 5
5
A
84 105Right-handed alpha
Helix 6
6
A
105 112Right-handed alpha
Helix 7
7
A
130 141Right-handed alpha
Helix 8
8
A
155 158Right-handed 310
Helix 9
9
B
3 12Right-handed alpha
Helix 10
10
B
19 37Right-handed alpha
Helix 11
11
B
47 61Right-handed alpha
Helix 12
12
B
69 78Right-handed alpha
Helix 13
13
B
79 80Right-handed 310
Helix 14
14
B
81 83Right-handed 310
Helix 15
15
B
84 104Right-handed alpha
Helix 16
16
B
105 112Right-handed alpha
Helix 17
17
B
130 141Right-handed alpha
Helix 18
18
B
155 158Right-handed 310
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There are 3 sheets in PDB entry 1MW5. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 18first strand
Strand 2
A
123 128anti-parallel
Strand 3
A
143 153anti-parallel
Strand 4
B
143 153anti-parallel
Strand 5
B
123 128anti-parallel
Strand 6
B
15 18anti-parallel
Strand 7
A
15 18anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 116first strand
Strand 2
A
119 120anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 116first strand
Strand 2
B
119 120anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il