Analysis of interatomic Contacts of Structural Units in PDB entry:
1MYR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MYR entry

There is 1 chain in PDB entry 1MYR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3PRO 501
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1MYR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 24Right-handed 310
Helix 2
2
A
37 40Right-handed alpha
Helix 3
3
A
50 57Right-handed alpha
Helix 4
4
A
59 62Right-handed alpha
Helix 5
5
A
75 89Right-handed alpha
Helix 6
6
A
100 103Right-handed alpha
Helix 7
7
A
109 111Right-handed 310
Helix 8
8
A
115 131Right-handed alpha
Helix 9
9
A
146 152Right-handed alpha
Helix 10
10
A
154 156Right-handed 310
Helix 11
11
A
158 175Right-handed 310
Helix 12
12
A
188 196Right-handed alpha
Helix 13
13
A
222 244Right-handed alpha
Helix 14
14
A
246 248Right-handed 310
Helix 15
15
A
269 282Right-handed alpha
Helix 16
16
A
284 292Right-handed alpha
Helix 17
17
A
297 306Right-handed alpha
Helix 18
18
A
312 318Right-handed alpha
Helix 19
19
A
349 353Right-handed 310
Helix 20
20
A
378 380Right-handed 310
Helix 21
21
A
386 399Right-handed 310
Helix 22
22
A
420 424Right-handed alpha
Helix 23
23
A
427 447Right-handed alpha
Helix 24
24
A
490 499Right-handed alpha
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There are 4 sheets in PDB entry 1MYR. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 138first strand
Strand 2
A
93 97parallel
Strand 3
A
30 34parallel
Strand 4
A
450 456parallel
Strand 5
A
404 409parallel
Strand 6
A
325 329parallel
Strand 7
A
255 258parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 183first strand
Strand 2
A
251 253parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 263first strand
Strand 2
A
332 337parallel
Strand 3
A
355 358anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
476 479first strand
Strand 2
A
482 488anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il