Analysis of interatomic Contacts of Structural Units in PDB entry:
1MZ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MZ8 entry

There are 4 chains in PDB entry 1MZ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 87
B
 LYS 446LYS 576
C
 MET 1GLY 87
D
 ARG 447LYS 576
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1MZ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 10Right-handed 310
Helix 2
2
A
11 27Right-handed alpha
Helix 3
3
A
31 46Right-handed alpha
Helix 4
4
A
51 56Right-handed alpha
Helix 5
5
A
64 79Right-handed alpha
Helix 6
6
B
477 485Right-handed alpha
Helix 7
7
B
491 506Right-handed alpha
Helix 8
8
B
506 511Right-handed alpha
Helix 9
9
B
514 523Right-handed alpha
Helix 10
10
B
530 534Right-handed 310
Helix 11
11
B
548 552Right-handed 310
Helix 12
12
B
565 574Right-handed alpha
Helix 13
13
C
6 10Right-handed 310
Helix 14
14
C
11 27Right-handed alpha
Helix 15
15
C
31 46Right-handed alpha
Helix 16
16
C
51 56Right-handed alpha
Helix 17
17
C
64 79Right-handed alpha
Helix 18
18
D
477 485Right-handed alpha
Helix 19
19
D
491 506Right-handed alpha
Helix 20
20
D
506 511Right-handed alpha
Helix 21
21
D
514 523Right-handed alpha
Helix 22
22
D
530 534Right-handed 310
Helix 23
23
D
548 552Right-handed 310
Helix 24
24
D
565 574Right-handed alpha
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There are 4 sheets in PDB entry 1MZ8. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
451 452first strand
Strand 2
B
488 489anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
474 475first strand
Strand 2
B
561 564anti-parallel
Strand 3
B
542 545anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
451 452first strand
Strand 2
D
488 489anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
474 475first strand
Strand 2
D
561 564anti-parallel
Strand 3
D
542 545anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il