Analysis of interatomic Contacts of Structural Units in PDB entry:
1MZJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MZJ entry

There are 2 chains in PDB entry 1MZJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 3SER 336
B
 PRO 2PRO 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 1MZJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 32Right-handed alpha
Helix 2
2
A
38 47Right-handed alpha
Helix 3
3
A
59 76Right-handed alpha
Helix 4
4
A
78 82Right-handed 310
Helix 5
5
A
98 108Right-handed alpha
Helix 6
6
A
119 121Right-handed 310
Helix 7
7
A
122 138Right-handed alpha
Helix 8
8
A
152 155Right-handed 310
Helix 9
9
A
192 196Right-handed 310
Helix 10
10
A
203 208Right-handed alpha
Helix 11
11
A
221 243Right-handed alpha
Helix 12
12
A
247 251Right-handed 310
Helix 13
13
A
260 272Right-handed alpha
Helix 14
14
A
282 287Right-handed alpha
Helix 15
15
A
291 305Right-handed alpha
Helix 16
16
B
28 32Right-handed alpha
Helix 17
17
B
40 45Right-handed alpha
Helix 18
18
B
59 76Right-handed alpha
Helix 19
19
B
78 82Right-handed 310
Helix 20
20
B
98 108Right-handed alpha
Helix 21
21
B
119 121Right-handed 310
Helix 22
22
B
122 137Right-handed alpha
Helix 23
23
B
152 155Right-handed 310
Helix 24
24
B
192 195Right-handed 310
Helix 25
25
B
203 208Right-handed alpha
Helix 26
26
B
221 244Right-handed alpha
Helix 27
27
B
247 251Right-handed 310
Helix 28
28
B
260 272Right-handed alpha
Helix 29
29
B
282 287Right-handed alpha
Helix 30
30
B
291 303Right-handed alpha
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There are 7 sheets in PDB entry 1MZJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 20first strand
Strand 2
A
168 178anti-parallel
Strand 3
A
143 150anti-parallel
Strand 4
A
84 88parallel
Strand 5
A
113 118parallel
Strand 6
B
113 118anti-parallel
Strand 7
B
84 88parallel
Strand 8
B
143 150parallel
Strand 9
B
168 178anti-parallel
Strand 10
B
11 20anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 27first strand
Strand 2
A
50 52anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 190first strand
Strand 2
A
323 330anti-parallel
Strand 3
A
312 319anti-parallel
Strand 4
A
253 256parallel
Strand 5
A
278 279parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 200first strand
Strand 2
A
218 220anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 27first strand
Strand 2
B
50 52anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 190first strand
Strand 2
B
323 330anti-parallel
Strand 3
B
312 319anti-parallel
Strand 4
B
253 256parallel
Strand 5
B
278 279parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 200first strand
Strand 2
B
218 220anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il