Analysis of interatomic Contacts of Structural Units in PDB entry:
1MZZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1MZZ entry

There are 3 chains in PDB entry 1MZZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 39	LEU 372
B	VAL 1039	LEU 1372
C	VAL 2039	LEU 2372

There are 18 helices in PDB entry 1MZZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	135	143	Right-handed 310
Helix 2	2	A	170	172	Right-handed 310
Helix 3	3	A	173	180	Right-handed alpha
Helix 4	4	A	230	243	Right-handed alpha
Helix 5	5	A	260	264	Right-handed 310
Helix 6	6	A	339	345	Right-handed alpha
Helix 7	7	B	1135	1143	Right-handed 310
Helix 8	8	B	1170	1172	Right-handed 310
Helix 9	9	B	1173	1179	Right-handed alpha
Helix 10	10	B	1230	1243	Right-handed alpha
Helix 11	11	B	1260	1264	Right-handed 310
Helix 12	12	B	1339	1345	Right-handed alpha
Helix 13	13	C	2135	2143	Right-handed 310
Helix 14	14	C	2170	2172	Right-handed 310
Helix 15	15	C	2173	2180	Right-handed alpha
Helix 16	16	C	2230	2243	Right-handed alpha
Helix 17	17	C	2260	2264	Right-handed 310
Helix 18	18	C	2339	2345	Right-handed alpha

There are 17 sheets in PDB entry 1MZZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	95	first strand
Strand 2	A	70	85	anti-parallel
Strand 3	A	46	48	parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	95	first strand
Strand 2	A	70	85	anti-parallel
Strand 3	A	111	118	parallel
Strand 4	A	149	156	anti-parallel
Strand 5	B	1363	1371	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	107	first strand
Strand 2	A	183	189	parallel
Strand 3	A	161	166	anti-parallel
Strand 4	A	129	130	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	195	first strand
Strand 2	A	201	202	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	252	first strand
Strand 2	A	206	215	anti-parallel
Strand 3	A	272	279	parallel
Strand 4	A	319	326	anti-parallel
Strand 5	A	295	297	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	268	first strand
Strand 2	A	349	355	parallel
Strand 3	A	331	337	anti-parallel
Strand 4	A	286	289	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2088	2095	first strand
Strand 2	C	2070	2085	anti-parallel
Strand 3	C	2046	2048	parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2088	2095	first strand
Strand 2	C	2070	2085	anti-parallel
Strand 3	C	2111	2118	parallel
Strand 4	C	2149	2156	anti-parallel
Strand 5	A	363	371	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1088	1095	first strand
Strand 2	B	1070	1085	anti-parallel
Strand 3	B	1046	1048	parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1088	1095	first strand
Strand 2	B	1070	1085	anti-parallel
Strand 3	B	1111	1118	parallel
Strand 4	B	1149	1156	anti-parallel
Strand 5	C	2363	2371	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1103	1107	first strand
Strand 2	B	1183	1189	parallel
Strand 3	B	1161	1166	anti-parallel
Strand 4	B	1129	1130	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1194	1195	first strand
Strand 2	B	1201	1202	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1249	1252	first strand
Strand 2	B	1206	1215	anti-parallel
Strand 3	B	1272	1279	parallel
Strand 4	B	1319	1326	anti-parallel
Strand 5	B	1295	1297	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1265	1268	first strand
Strand 2	B	1349	1355	parallel
Strand 3	B	1331	1337	anti-parallel
Strand 4	B	1286	1289	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2104	2107	first strand
Strand 2	C	2183	2189	parallel
Strand 3	C	2161	2166	anti-parallel
Strand 4	C	2129	2130	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2249	2252	first strand
Strand 2	C	2206	2215	anti-parallel
Strand 3	C	2272	2279	parallel
Strand 4	C	2319	2326	anti-parallel
Strand 5	C	2295	2297	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2265	2268	first strand
Strand 2	C	2349	2355	parallel
Strand 3	C	2331	2337	anti-parallel
Strand 4	C	2286	2289	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1MZZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
1MZZ