Analysis of interatomic Contacts of Structural Units in PDB entry:
1N06


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1N06 entry

There are 2 chains in PDB entry 1N06 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 9LYS 162
B
 LYS 8LYS 162
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 1N06. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
50 52Right-handed 310
Helix 2
2
A
53 58Right-handed alpha
Helix 3
3
A
128 147Right-handed alpha
Helix 4
4
A
149 154Right-handed alpha
Helix 5
5
A
155 162Right-handed 310
Helix 6
6
B
50 53Right-handed 310
Helix 7
7
B
128 147Right-handed alpha
Helix 8
8
B
149 154Right-handed alpha
Helix 9
9
B
155 162Right-handed 310
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There are 2 sheets in PDB entry 1N06. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 31first strand
Strand 2
A
46 48anti-parallel
Strand 3
A
93 99anti-parallel
Strand 4
A
74 84anti-parallel
Strand 5
A
63 71anti-parallel
Strand 6
A
111 121anti-parallel
Strand 7
A
24 31anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 31first strand
Strand 2
B
46 48anti-parallel
Strand 3
B
93 99anti-parallel
Strand 4
B
74 84anti-parallel
Strand 5
B
63 71anti-parallel
Strand 6
B
111 121anti-parallel
Strand 7
B
24 31anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il