Analysis of interatomic Contacts of Structural Units in PDB entry:
1N10


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1N10 entry

There are 2 chains in PDB entry 1N10 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1003SER 1240
B
 PRO 2003SER 2240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 1N10. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1060 1065Right-handed alpha
Helix 2
2
A
1066 1068Right-handed 310
Helix 3
3
A
1110 1115Right-handed alpha
Helix 4
4
A
1121 1127Right-handed alpha
Helix 5
5
B
2060 2065Right-handed alpha
Helix 6
6
B
2066 2068Right-handed 310
Helix 7
7
B
2110 2115Right-handed alpha
Helix 8
8
B
2121 2127Right-handed alpha
Helix 9
9
B
2193 2197Right-handed 310
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There are 6 sheets in PDB entry 1N10. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1020 1027first strand
Strand 2
A
1105 1109parallel
Strand 3
A
1056 1059anti-parallel
Strand 4
A
1089 1096parallel
Strand 5
A
1073 1078anti-parallel
Strand 6
A
1131 1137anti-parallel
Strand 7
A
1020 1027anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1198 1201first strand
Strand 2
A
1160 1166anti-parallel
Strand 3
A
1149 1152anti-parallel
Strand 4
A
1236 1239anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1188 1189first strand
Strand 2
A
1174 1181anti-parallel
Strand 3
A
1210 1216anti-parallel
Strand 4
A
1221 1228anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2020 2027first strand
Strand 2
B
2105 2109parallel
Strand 3
B
2056 2059anti-parallel
Strand 4
B
2089 2096parallel
Strand 5
B
2073 2078anti-parallel
Strand 6
B
2131 2137anti-parallel
Strand 7
B
2020 2027anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2198 2201first strand
Strand 2
B
2160 2166anti-parallel
Strand 3
B
2149 2152anti-parallel
Strand 4
B
2236 2239anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2188 2189first strand
Strand 2
B
2174 2181anti-parallel
Strand 3
B
2210 2216anti-parallel
Strand 4
B
2221 2228anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il