Analysis of interatomic Contacts of Structural Units in PDB entry:
1N1V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1N1V entry

There is 1 chain in PDB entry 1N1V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1ASP 634
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 1N1V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
123 127Right-handed 310
Helix 2
2
A
164 167Right-handed 310
Helix 3
3
A
375 399Right-handed alpha
Helix 4
4
A
471 474Right-handed 310
Helix 5
5
A
479 484Right-handed 310
Helix 6
6
A
617 628Right-handed alpha
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There are 8 sheets in PDB entry 1N1V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 14first strand
Strand 2
A
367 374anti-parallel
Strand 3
A
355 364anti-parallel
Strand 4
A
347 352anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 24first strand
Strand 2
A
30 34anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 46first strand
Strand 2
A
49 57anti-parallel
Strand 3
A
67 74anti-parallel
Strand 4
A
82 87anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 157first strand
Strand 2
A
133 146anti-parallel
Strand 3
A
161 162anti-parallel
Strand 4
A
133 146anti-parallel
Strand 5
A
109 117anti-parallel
Strand 6
A
97 106anti-parallel
Strand 7
A
184 185parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 171first strand
Strand 2
A
174 181anti-parallel
Strand 3
A
194 202anti-parallel
Strand 4
A
187 188anti-parallel
Strand 5
A
194 202anti-parallel
Strand 6
A
207 214anti-parallel
Strand 7
A
222 223anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 240first strand
Strand 2
A
243 249anti-parallel
Strand 3
A
257 260anti-parallel
Strand 4
A
268 269anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 298first strand
Strand 2
A
301 309anti-parallel
Strand 3
A
321 326anti-parallel
Strand 4
A
331 336anti-parallel
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There are 19 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
528 532first strand
Strand 2
A
516 523anti-parallel
Strand 3
A
501 509anti-parallel
Strand 4
A
585 591anti-parallel
Strand 5
A
465 469anti-parallel
Strand 6
A
445 448anti-parallel
Strand 7
A
435 438anti-parallel
Strand 8
A
423 432anti-parallel
Strand 9
A
604 612anti-parallel
Strand 10
A
456 459anti-parallel
Strand 11
A
450 453anti-parallel
Strand 12
A
456 459anti-parallel
Strand 13
A
604 612anti-parallel
Strand 14
A
486 494anti-parallel
Strand 15
A
549 556anti-parallel
Strand 16
A
559 564anti-parallel
Strand 17
A
567 568anti-parallel
Strand 18
A
559 564anti-parallel
Strand 19
A
574 575anti-parallel
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