Analysis of interatomic Contacts of Structural Units in PDB entry:
1N2D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1N2D entry

There are 3 chains in PDB entry 1N2D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3GLN 149
B
 ARG 5GLN 149
C
 GLN 806PHE 853
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 1N2D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 15Right-handed alpha
Helix 2
2
A
26 34Right-handed alpha
Helix 3
3
A
39 50Right-handed alpha
Helix 4
4
A
50 56Right-handed alpha
Helix 5
5
A
61 71Right-handed alpha
Helix 6
6
A
71 77Right-handed alpha
Helix 7
7
A
78 80Right-handed 310
Helix 8
8
A
83 92Right-handed alpha
Helix 9
9
A
103 113Right-handed alpha
Helix 10
10
A
118 128Right-handed alpha
Helix 11
11
A
139 148Right-handed alpha
Helix 12
12
B
7 15Right-handed alpha
Helix 13
13
B
26 34Right-handed alpha
Helix 14
14
B
39 49Right-handed alpha
Helix 15
15
B
50 54Right-handed 310
Helix 16
16
B
60 71Right-handed alpha
Helix 17
17
B
71 81Right-handed alpha
Helix 18
18
B
82 91Right-handed alpha
Helix 19
19
B
92 94Right-handed 310
Helix 20
20
B
103 113Right-handed alpha
Helix 21
21
B
118 126Right-handed alpha
Helix 22
22
B
139 148Right-handed alpha
Helix 23
23
C
807 853Right-handed alpha
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There are 4 sheets in PDB entry 1N2D. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
58 60anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 102first strand
Strand 2
A
136 138anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 23first strand
Strand 2
B
58 59anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 102first strand
Strand 2
B
136 138anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il