Analysis of interatomic Contacts of Structural Units in PDB entry:
1N46


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1N46 entry

There are 2 chains in PDB entry 1N46 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 211ASP 461
B
 LYS 211ASP 461
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 1N46. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
215 231Right-handed alpha
Helix 2
2
A
265 274Right-handed alpha
Helix 3
3
A
275 289Right-handed alpha
Helix 4
4
A
292 296Right-handed 310
Helix 5
5
A
297 320Right-handed alpha
Helix 6
6
A
337 344Right-handed alpha
Helix 7
7
A
348 361Right-handed alpha
Helix 8
8
A
362 364Right-handed 310
Helix 9
9
A
366 379Right-handed alpha
Helix 10
10
A
388 411Right-handed alpha
Helix 11
11
A
416 446Right-handed alpha
Helix 12
12
A
447 451Right-handed 310
Helix 13
13
A
452 460Right-handed alpha
Helix 14
14
B
215 231Right-handed alpha
Helix 15
15
B
265 289Right-handed alpha
Helix 16
16
B
290 296Right-handed alpha
Helix 17
17
B
297 320Right-handed alpha
Helix 18
18
B
331 333Right-handed 310
Helix 19
19
B
338 344Right-handed alpha
Helix 20
20
B
347 361Right-handed alpha
Helix 21
21
B
362 364Right-handed 310
Helix 22
22
B
366 379Right-handed alpha
Helix 23
23
B
388 409Right-handed alpha
Helix 24
24
B
416 446Right-handed alpha
Helix 25
25
B
447 451Right-handed 310
Helix 26
26
B
452 460Right-handed alpha
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There are 2 sheets in PDB entry 1N46. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 245first strand
Strand 2
A
334 336parallel
Strand 3
A
328 330anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
321 322first strand
Strand 2
B
327 330anti-parallel
Strand 3
B
334 337anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il