Analysis of interatomic Contacts of Structural Units in PDB entry:
1N47


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1N47 entry

There are 4 chains in PDB entry 1N47 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1ALA 233
B
 THR 1ALA 233
C
 THR 1ALA 233
D
 THR 1ALA 233
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1N47. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
101 105Right-handed 310
Helix 2
2
A
114 118Right-handed 310
Helix 3
3
A
194 198Right-handed 310
Helix 4
4
B
101 105Right-handed 310
Helix 5
5
B
114 118Right-handed 310
Helix 6
6
B
194 198Right-handed 310
Helix 7
7
C
101 105Right-handed 310
Helix 8
8
C
194 198Right-handed 310
Helix 9
9
D
101 105Right-handed 310
Helix 10
10
D
114 118Right-handed 310
Helix 11
11
D
194 198Right-handed 310
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There are 6 sheets in PDB entry 1N47. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 20 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 192first strand
Strand 2
A
173 180anti-parallel
Strand 3
A
161 168anti-parallel
Strand 4
A
66 74anti-parallel
Strand 5
A
222 232anti-parallel
Strand 6
A
32 33anti-parallel
Strand 7
A
25 26anti-parallel
Strand 8
A
32 33anti-parallel
Strand 9
A
222 232anti-parallel
Strand 10
A
2 8anti-parallel
Strand 11
B
2 8anti-parallel
Strand 12
B
222 232anti-parallel
Strand 13
B
32 33anti-parallel
Strand 14
B
25 26anti-parallel
Strand 15
B
32 33anti-parallel
Strand 16
B
222 232anti-parallel
Strand 17
B
66 74anti-parallel
Strand 18
B
161 168anti-parallel
Strand 19
B
173 180anti-parallel
Strand 20
B
185 192anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 22first strand
Strand 2
A
47 52anti-parallel
Strand 3
A
202 211anti-parallel
Strand 4
A
56 57anti-parallel
Strand 5
A
202 211anti-parallel
Strand 6
A
85 92anti-parallel
Strand 7
A
120 125anti-parallel
Strand 8
A
137 142anti-parallel
Strand 9
A
149 152anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 22first strand
Strand 2
B
47 52anti-parallel
Strand 3
B
202 211anti-parallel
Strand 4
B
56 57anti-parallel
Strand 5
B
202 211anti-parallel
Strand 6
B
85 92anti-parallel
Strand 7
B
120 125anti-parallel
Strand 8
B
137 142anti-parallel
Strand 9
B
149 152anti-parallel
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There are 20 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
185 192first strand
Strand 2
C
173 180anti-parallel
Strand 3
C
161 167anti-parallel
Strand 4
C
66 74anti-parallel
Strand 5
C
222 232anti-parallel
Strand 6
C
32 33anti-parallel
Strand 7
C
25 26anti-parallel
Strand 8
C
32 33anti-parallel
Strand 9
C
222 232anti-parallel
Strand 10
C
2 8anti-parallel
Strand 11
D
2 8anti-parallel
Strand 12
D
222 232anti-parallel
Strand 13
D
32 33anti-parallel
Strand 14
D
25 26anti-parallel
Strand 15
D
32 33anti-parallel
Strand 16
D
222 232anti-parallel
Strand 17
D
66 74anti-parallel
Strand 18
D
161 168anti-parallel
Strand 19
D
173 180anti-parallel
Strand 20
D
185 192anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
18 22first strand
Strand 2
C
47 52anti-parallel
Strand 3
C
202 211anti-parallel
Strand 4
C
56 57anti-parallel
Strand 5
C
202 211anti-parallel
Strand 6
C
85 92anti-parallel
Strand 7
C
120 125anti-parallel
Strand 8
C
137 142anti-parallel
Strand 9
C
149 152anti-parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
18 22first strand
Strand 2
D
47 52anti-parallel
Strand 3
D
202 211anti-parallel
Strand 4
D
56 57anti-parallel
Strand 5
D
202 211anti-parallel
Strand 6
D
85 92anti-parallel
Strand 7
D
120 125anti-parallel
Strand 8
D
137 142anti-parallel
Strand 9
D
150 152anti-parallel
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