Analysis of interatomic Contacts of Structural Units in PDB entry:
1N4V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1N4V entry

There is 1 chain in PDB entry 1N4V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 9THR 507
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1N4V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 32Right-handed alpha
Helix 2
2
A
62 66Right-handed 310
Helix 3
3
A
78 83Right-handed alpha
Helix 4
4
A
84 86Right-handed 310
Helix 5
5
A
113 118Right-handed 310
Helix 6
6
A
127 135Right-handed alpha
Helix 7
7
A
139 146Right-handed alpha
Helix 8
8
A
146 156Right-handed alpha
Helix 9
9
A
161 168Right-handed alpha
Helix 10
10
A
171 184Right-handed alpha
Helix 11
11
A
196 205Right-handed alpha
Helix 12
12
A
211 215Right-handed 310
Helix 13
13
A
231 239Right-handed alpha
Helix 14
14
A
289 304Right-handed alpha
Helix 15
15
A
402 405Right-handed 310
Helix 16
16
A
406 425Right-handed alpha
Helix 17
17
A
474 478Right-handed 310
Helix 18
18
A
486 506Right-handed alpha
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There are 6 sheets in PDB entry 1N4V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 255first strand
Strand 2
A
261 268anti-parallel
Strand 3
A
274 287anti-parallel
Strand 4
A
10 16parallel
Strand 5
A
36 40parallel
Strand 6
A
242 246parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 255first strand
Strand 2
A
261 268anti-parallel
Strand 3
A
274 287anti-parallel
Strand 4
A
470 472parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 100first strand
Strand 2
A
105 109anti-parallel
Strand 3
A
444 445parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 190first strand
Strand 2
A
346 350anti-parallel
Strand 3
A
358 363anti-parallel
Strand 4
A
373 380anti-parallel
Strand 5
A
324 329anti-parallel
Strand 6
A
427 428anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 190first strand
Strand 2
A
346 350anti-parallel
Strand 3
A
358 363anti-parallel
Strand 4
A
373 380anti-parallel
Strand 5
A
324 329anti-parallel
Strand 6
A
440 441anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 391first strand
Strand 2
A
396 399anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il