Analysis of interatomic Contacts of Structural Units in PDB entry:
1N60


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1N60 entry

There are 4 chains in PDB entry 1N60 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3GLU 163
B
 VAL 7VAL 809
C
 MET 1ALA 286
D
 LYS 3VAL 52
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 95 helices in PDB entry 1N60. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 32Right-handed alpha
Helix 2
2
A
62 64Right-handed 310
Helix 3
3
A
65 70Right-handed 310
Helix 4
4
A
76 80Right-handed 310
Helix 5
5
A
88 97Right-handed alpha
Helix 6
6
A
105 120Right-handed alpha
Helix 7
7
A
124 132Right-handed alpha
Helix 8
8
A
142 158Right-handed alpha
Helix 9
9
B
10 19Right-handed alpha
Helix 10
10
B
29 34Right-handed alpha
Helix 11
11
B
40 44Right-handed 310
Helix 12
12
B
69 75Right-handed alpha
Helix 13
13
B
83 88Right-handed alpha
Helix 14
14
B
89 91Right-handed 310
Helix 15
15
B
125 136Right-handed alpha
Helix 16
16
B
148 152Right-handed 310
Helix 17
17
B
161 165Right-handed 310
Helix 18
18
B
188 199Right-handed alpha
Helix 19
19
B
241 254Right-handed alpha
Helix 20
20
B
256 258Right-handed 310
Helix 21
21
B
278 292Right-handed alpha
Helix 22
22
B
300 308Right-handed alpha
Helix 23
23
B
355 359Right-handed 310
Helix 24
24
B
391 411Right-handed alpha
Helix 25
25
B
413 422Right-handed alpha
Helix 26
26
B
424 428Right-handed 310
Helix 27
27
B
442 455Right-handed alpha
Helix 28
28
B
455 473Right-handed alpha
Helix 29
29
B
531 545Right-handed alpha
Helix 30
30
B
547 549Right-handed 310
Helix 31
31
B
575 600Right-handed alpha
Helix 32
32
B
602 604Right-handed 310
Helix 33
33
B
625 635Right-handed alpha
Helix 34
34
B
691 712Right-handed alpha
Helix 35
35
B
763 783Right-handed alpha
Helix 36
36
B
794 805Right-handed alpha
Helix 37
37
C
13 25Right-handed alpha
Helix 38
38
C
36 43Right-handed alpha
Helix 39
39
C
57 61Right-handed 310
Helix 40
40
C
77 84Right-handed alpha
Helix 41
41
C
84 91Right-handed alpha
Helix 42
42
C
91 99Right-handed alpha
Helix 43
43
C
103 110Right-handed alpha
Helix 44
44
C
111 118Right-handed alpha
Helix 45
45
C
124 133Right-handed alpha
Helix 46
46
C
149 152Right-handed alpha
Helix 47
47
C
226 234Right-handed alpha
Helix 48
48
C
239 252Right-handed alpha
Helix 49
49
C
263 286Right-handed alpha
Helix 50
50
D
24 32Right-handed alpha
Helix 51
51
D
62 64Right-handed 310
Helix 52
52
D
65 70Right-handed 310
Helix 53
53
D
76 80Right-handed 310
Helix 54
54
D
88 97Right-handed alpha
Helix 55
55
D
105 120Right-handed alpha
Helix 56
56
D
124 132Right-handed alpha
Helix 57
57
D
142 159Right-handed alpha
Helix 58
58
E
29 34Right-handed alpha
Helix 59
59
E
40 44Right-handed 310
Helix 60
60
E
69 75Right-handed alpha
Helix 61
61
E
83 88Right-handed alpha
Helix 62
62
E
89 91Right-handed 310
Helix 63
63
E
125 136Right-handed alpha
Helix 64
64
E
148 152Right-handed 310
Helix 65
65
E
188 199Right-handed alpha
Helix 66
66
E
241 254Right-handed alpha
Helix 67
67
E
256 258Right-handed 310
Helix 68
68
E
278 292Right-handed alpha
Helix 69
69
E
300 308Right-handed alpha
Helix 70
70
E
355 359Right-handed 310
Helix 71
71
E
391 411Right-handed alpha
Helix 72
72
E
413 422Right-handed alpha
Helix 73
73
E
424 428Right-handed 310
Helix 74
74
E
442 455Right-handed alpha
Helix 75
75
E
455 472Right-handed alpha
Helix 76
76
E
531 545Right-handed alpha
Helix 77
77
E
547 549Right-handed 310
Helix 78
78
E
575 600Right-handed alpha
Helix 79
79
E
602 604Right-handed 310
Helix 80
80
E
625 635Right-handed alpha
Helix 81
81
E
691 712Right-handed alpha
Helix 82
82
E
763 783Right-handed alpha
Helix 83
83
E
794 805Right-handed alpha
Helix 84
84
F
13 25Right-handed alpha
Helix 85
85
F
36 43Right-handed alpha
Helix 86
86
F
57 61Right-handed 310
Helix 87
87
F
77 84Right-handed alpha
Helix 88
88
F
84 91Right-handed alpha
Helix 89
89
F
91 99Right-handed alpha
Helix 90
90
F
103 110Right-handed alpha
Helix 91
91
F
111 118Right-handed alpha
Helix 92
92
F
124 133Right-handed alpha
Helix 93
93
F
226 234Right-handed alpha
Helix 94
94
F
239 252Right-handed alpha
Helix 95
95
F
263 286Right-handed alpha
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There are 33 sheets in PDB entry 1N60. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 19first strand
Strand 2
A
4 10anti-parallel
Strand 3
A
73 75parallel
Strand 4
A
51 54anti-parallel
Strand 5
A
57 60anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 82first strand
Strand 2
B
117 123anti-parallel
Strand 3
B
50 56anti-parallel
Strand 4
B
295 298parallel
Strand 5
B
221 227anti-parallel
Strand 6
B
232 237anti-parallel
Strand 7
B
260 263parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 111first strand
Strand 2
B
62 68anti-parallel
Strand 3
B
137 142anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 96first strand
Strand 2
B
102 104anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 170first strand
Strand 2
B
173 174anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 187first strand
Strand 2
B
368 375anti-parallel
Strand 3
B
328 338parallel
Strand 4
B
314 322anti-parallel
Strand 5
B
201 209anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
310 311first strand
Strand 2
B
382 383parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
430 431first strand
Strand 2
B
437 438anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
477 487first strand
Strand 2
B
659 669anti-parallel
Strand 3
B
675 685anti-parallel
Strand 4
B
743 746parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
499 500first strand
Strand 2
B
503 504anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
551 554first strand
Strand 2
B
519 523parallel
Strand 3
B
507 513anti-parallel
Strand 4
B
645 650anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
606 608first strand
Strand 2
B
612 615anti-parallel
Strand 3
B
618 624anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
716 717first strand
Strand 2
B
723 724anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
7 9first strand
Strand 2
C
50 53parallel
Strand 3
C
28 31parallel
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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
63 66first strand
Strand 2
C
69 73anti-parallel
Strand 3
C
166 173anti-parallel
Strand 4
C
135 140anti-parallel
Strand 5
C
143 148anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
153 155first strand
Strand 2
C
158 159anti-parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
180 186first strand
Strand 2
C
196 205anti-parallel
Strand 3
C
208 217anti-parallel
Strand 4
C
224 225anti-parallel
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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
13 19first strand
Strand 2
D
4 10anti-parallel
Strand 3
D
73 75parallel
Strand 4
D
51 54anti-parallel
Strand 5
D
57 60anti-parallel
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There are 7 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
78 82first strand
Strand 2
E
117 123anti-parallel
Strand 3
E
50 56anti-parallel
Strand 4
E
295 298parallel
Strand 5
E
221 227anti-parallel
Strand 6
E
232 237anti-parallel
Strand 7
E
260 263parallel
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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
110 111first strand
Strand 2
E
62 68anti-parallel
Strand 3
E
137 142anti-parallel
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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
94 96first strand
Strand 2
E
102 104anti-parallel
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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
180 187first strand
Strand 2
E
368 375anti-parallel
Strand 3
E
328 338parallel
Strand 4
E
314 322anti-parallel
Strand 5
E
201 209anti-parallel
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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
310 311first strand
Strand 2
E
382 383parallel
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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
430 431first strand
Strand 2
E
437 438anti-parallel
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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
477 487first strand
Strand 2
E
659 669anti-parallel
Strand 3
E
675 685anti-parallel
Strand 4
E
743 746parallel
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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
499 500first strand
Strand 2
E
503 504anti-parallel
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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
551 554first strand
Strand 2
E
519 523parallel
Strand 3
E
507 513anti-parallel
Strand 4
E
644 650anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
606 608first strand
Strand 2
E
612 615anti-parallel
Strand 3
E
618 624anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
716 717first strand
Strand 2
E
723 724anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
7 9first strand
Strand 2
F
50 53parallel
Strand 3
F
28 31parallel
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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
63 66first strand
Strand 2
F
69 73anti-parallel
Strand 3
F
166 173anti-parallel
Strand 4
F
135 140anti-parallel
Strand 5
F
143 148anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
153 155first strand
Strand 2
F
158 159anti-parallel
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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
180 186first strand
Strand 2
F
196 205anti-parallel
Strand 3
F
208 217anti-parallel
Strand 4
F
224 225anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il