Analysis of interatomic Contacts of Structural Units in PDB entry:
1N6M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1N6M entry

There are 2 chains in PDB entry 1N6M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 292LYS 671
B
 MET 292ASN 668
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 1N6M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
292 347Right-handed alpha
Helix 2
2
A
407 424Right-handed alpha
Helix 3
3
A
439 445Right-handed alpha
Helix 4
4
A
452 469Right-handed alpha
Helix 5
5
A
524 539Right-handed alpha
Helix 6
6
A
596 615Right-handed alpha
Helix 7
7
A
621 624Right-handed 310
Helix 8
8
A
625 631Right-handed alpha
Helix 9
9
A
632 635Right-handed 310
Helix 10
10
A
650 652Right-handed 310
Helix 11
11
A
653 669Right-handed alpha
Helix 12
12
B
293 295Right-handed 310
Helix 13
13
B
296 347Right-handed alpha
Helix 14
14
B
384 388Right-handed 310
Helix 15
15
B
407 423Right-handed alpha
Helix 16
16
B
439 445Right-handed alpha
Helix 17
17
B
452 469Right-handed alpha
Helix 18
18
B
524 539Right-handed alpha
Helix 19
19
B
600 615Right-handed alpha
Helix 20
20
B
625 631Right-handed alpha
Helix 21
21
B
653 668Right-handed alpha
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There are 10 sheets in PDB entry 1N6M. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 402first strand
Strand 2
A
349 355parallel
Strand 3
A
640 647parallel
Strand 4
A
427 433parallel
Strand 5
A
570 580parallel
Strand 6
A
554 565anti-parallel
Strand 7
A
473 484anti-parallel
Strand 8
A
489 491anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 402first strand
Strand 2
A
349 355parallel
Strand 3
A
640 647parallel
Strand 4
A
427 433parallel
Strand 5
A
570 580parallel
Strand 6
A
554 565anti-parallel
Strand 7
A
473 484anti-parallel
Strand 8
A
520 521anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 372first strand
Strand 2
A
377 381anti-parallel
Strand 3
A
395 397anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
446 447first strand
Strand 2
A
450 451anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
502 505first strand
Strand 2
A
508 514anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
400 402first strand
Strand 2
B
349 355parallel
Strand 3
B
641 647parallel
Strand 4
B
429 434parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
369 372first strand
Strand 2
B
377 381anti-parallel
Strand 3
B
394 397anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
446 447first strand
Strand 2
B
450 451anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
474 475first strand
Strand 2
B
562 564anti-parallel
Strand 3
B
572 573anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
520 522first strand
Strand 2
B
477 479anti-parallel
Strand 3
B
555 560anti-parallel
Strand 4
B
577 580anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il