Analysis of interatomic Contacts of Structural Units in PDB entry:
1N8F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1N8F entry

There are 4 chains in PDB entry 1N8F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 8GLY 350
B
 LEU 8GLY 350
C
 LEU 8GLY 350
D
 LEU 8GLY 350
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 1N8F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 26Right-handed alpha
Helix 2
2
A
29 48Right-handed alpha
Helix 3
3
A
65 83Right-handed alpha
Helix 4
4
A
118 136Right-handed alpha
Helix 5
5
A
149 154Right-handed alpha
Helix 6
6
A
155 157Right-handed 310
Helix 7
7
A
169 178Right-handed alpha
Helix 8
8
A
193 204Right-handed alpha
Helix 9
9
A
242 256Right-handed alpha
Helix 10
10
A
267 271Right-handed 310
Helix 11
11
A
274 276Right-handed 310
Helix 12
12
A
277 291Right-handed alpha
Helix 13
13
A
330 350Right-handed alpha
Helix 14
14
B
18 26Right-handed alpha
Helix 15
15
B
29 48Right-handed alpha
Helix 16
16
B
65 83Right-handed alpha
Helix 17
17
B
118 136Right-handed alpha
Helix 18
18
B
149 154Right-handed alpha
Helix 19
19
B
155 157Right-handed 310
Helix 20
20
B
169 178Right-handed alpha
Helix 21
21
B
193 205Right-handed alpha
Helix 22
22
B
242 256Right-handed alpha
Helix 23
23
B
267 272Right-handed 310
Helix 24
24
B
274 276Right-handed 310
Helix 25
25
B
277 291Right-handed alpha
Helix 26
26
B
330 350Right-handed alpha
Helix 27
27
C
18 26Right-handed alpha
Helix 28
28
C
29 48Right-handed alpha
Helix 29
29
C
65 83Right-handed alpha
Helix 30
30
C
118 136Right-handed alpha
Helix 31
31
C
149 154Right-handed alpha
Helix 32
32
C
155 157Right-handed 310
Helix 33
33
C
169 178Right-handed alpha
Helix 34
34
C
193 204Right-handed alpha
Helix 35
35
C
242 256Right-handed alpha
Helix 36
36
C
267 272Right-handed 310
Helix 37
37
C
274 276Right-handed 310
Helix 38
38
C
277 292Right-handed alpha
Helix 39
39
C
330 350Right-handed alpha
Helix 40
40
D
18 26Right-handed alpha
Helix 41
41
D
29 48Right-handed alpha
Helix 42
42
D
65 83Right-handed alpha
Helix 43
43
D
118 136Right-handed alpha
Helix 44
44
D
149 154Right-handed alpha
Helix 45
45
D
155 157Right-handed 310
Helix 46
46
D
169 178Right-handed alpha
Helix 47
47
D
193 205Right-handed alpha
Helix 48
48
D
242 256Right-handed alpha
Helix 49
49
D
267 271Right-handed 310
Helix 50
50
D
274 276Right-handed 310
Helix 51
51
D
277 291Right-handed alpha
Helix 52
52
D
330 348Right-handed alpha
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There are 8 sheets in PDB entry 1N8F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 14first strand
Strand 2
B
218 223anti-parallel
Strand 3
B
208 212anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 59first strand
Strand 2
A
87 92parallel
Strand 3
A
140 143parallel
Strand 4
A
159 162parallel
Strand 5
A
183 186parallel
Strand 6
A
229 233parallel
Strand 7
A
262 265parallel
Strand 8
A
296 302parallel
Strand 9
A
54 59parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 212first strand
Strand 2
A
218 223anti-parallel
Strand 3
B
10 14anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 59first strand
Strand 2
B
87 92parallel
Strand 3
B
140 143parallel
Strand 4
B
159 162parallel
Strand 5
B
183 186parallel
Strand 6
B
229 233parallel
Strand 7
B
262 265parallel
Strand 8
B
296 302parallel
Strand 9
B
54 59parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 15first strand
Strand 2
D
218 223anti-parallel
Strand 3
D
208 212anti-parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
54 59first strand
Strand 2
C
87 92parallel
Strand 3
C
140 143parallel
Strand 4
C
159 162parallel
Strand 5
C
183 186parallel
Strand 6
C
229 233parallel
Strand 7
C
262 265parallel
Strand 8
C
296 302parallel
Strand 9
C
54 59parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
208 212first strand
Strand 2
C
218 223anti-parallel
Strand 3
D
10 14anti-parallel
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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
54 59first strand
Strand 2
D
87 92parallel
Strand 3
D
140 143parallel
Strand 4
D
159 162parallel
Strand 5
D
183 186parallel
Strand 6
D
229 233parallel
Strand 7
D
262 265parallel
Strand 8
D
296 302parallel
Strand 9
D
54 59parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il