Analysis of interatomic Contacts of Structural Units in PDB entry:
1N8J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1N8J entry

There are 20 chains in PDB entry 1N8J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	ILE 186
B	SER 1	ILE 186
C	SER 1	ILE 186
D	SER 1	ILE 186
E	SER 1	ILE 186
F	SER 1	ILE 186
G	SER 1	ILE 186
H	SER 1	ILE 186
I	SER 1	ILE 186
J	SER 1	ILE 186
K	SER 1	ILE 186
L	SER 1	ILE 186
M	SER 1	ILE 186
N	SER 1	ILE 186
O	SER 1	ILE 186
P	SER 1	ILE 186
Q	SER 1	ILE 186
R	SER 1	ILE 186
S	SER 1	ILE 186
T	SER 1	ILE 186

There are136 helices in PDB entry 1N8J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	25	29	Right-handed alpha
Helix 2	2	A	44	63	Right-handed alpha
Helix 3	3	A	74	85	Right-handed alpha
Helix 4	4	A	87	91	Right-handed 310
Helix 5	5	A	101	107	Right-handed alpha
Helix 6	6	A	143	160	Right-handed alpha
Helix 7	7	B	25	29	Right-handed alpha
Helix 8	8	B	44	55	Right-handed alpha
Helix 9	9	B	56	63	Right-handed alpha
Helix 10	10	B	74	85	Right-handed alpha
Helix 11	11	B	85	90	Right-handed alpha
Helix 12	12	B	101	107	Right-handed alpha
Helix 13	13	B	143	159	Right-handed alpha
Helix 14	14	C	26	28	Right-handed 310
Helix 15	15	C	44	55	Right-handed alpha
Helix 16	16	C	56	63	Right-handed alpha
Helix 17	17	C	74	85	Right-handed alpha
Helix 18	18	C	85	90	Right-handed alpha
Helix 19	19	C	101	107	Right-handed alpha
Helix 20	20	C	143	160	Right-handed alpha
Helix 21	21	D	26	29	Right-handed 310
Helix 22	22	D	44	56	Right-handed alpha
Helix 23	23	D	56	63	Right-handed alpha
Helix 24	24	D	74	83	Right-handed alpha
Helix 25	25	D	85	90	Right-handed alpha
Helix 26	26	D	101	107	Right-handed alpha
Helix 27	27	D	143	160	Right-handed alpha
Helix 28	28	E	26	28	Right-handed 310
Helix 29	29	E	44	56	Right-handed alpha
Helix 30	30	E	56	63	Right-handed alpha
Helix 31	31	E	74	85	Right-handed alpha
Helix 32	32	E	85	90	Right-handed alpha
Helix 33	33	E	101	107	Right-handed alpha
Helix 34	34	E	143	159	Right-handed alpha
Helix 35	35	E	179	183	Right-handed 310
Helix 36	36	F	26	29	Right-handed 310
Helix 37	37	F	44	55	Right-handed alpha
Helix 38	38	F	56	63	Right-handed alpha
Helix 39	39	F	74	85	Right-handed alpha
Helix 40	40	F	85	90	Right-handed alpha
Helix 41	41	F	101	107	Right-handed alpha
Helix 42	42	F	143	160	Right-handed alpha
Helix 43	43	G	26	28	Right-handed 310
Helix 44	44	G	44	55	Right-handed alpha
Helix 45	45	G	56	63	Right-handed alpha
Helix 46	46	G	74	85	Right-handed alpha
Helix 47	47	G	85	90	Right-handed alpha
Helix 48	48	G	101	107	Right-handed alpha
Helix 49	49	G	143	160	Right-handed alpha
Helix 50	50	H	26	29	Right-handed 310
Helix 51	51	H	44	56	Right-handed alpha
Helix 52	52	H	56	63	Right-handed alpha
Helix 53	53	H	74	85	Right-handed alpha
Helix 54	54	H	85	90	Right-handed alpha
Helix 55	55	H	101	107	Right-handed alpha
Helix 56	56	H	143	160	Right-handed alpha
Helix 57	57	I	26	28	Right-handed 310
Helix 58	58	I	44	56	Right-handed alpha
Helix 59	59	I	56	63	Right-handed alpha
Helix 60	60	I	74	85	Right-handed alpha
Helix 61	61	I	87	91	Right-handed 310
Helix 62	62	I	101	107	Right-handed alpha
Helix 63	63	I	143	160	Right-handed alpha
Helix 64	64	J	25	29	Right-handed alpha
Helix 65	65	J	44	63	Right-handed alpha
Helix 66	66	J	74	83	Right-handed alpha
Helix 67	67	J	85	90	Right-handed alpha
Helix 68	68	J	101	107	Right-handed alpha
Helix 69	69	J	143	160	Right-handed alpha
Helix 70	70	K	26	29	Right-handed 310
Helix 71	71	K	44	63	Right-handed alpha
Helix 72	72	K	74	85	Right-handed alpha
Helix 73	73	K	87	91	Right-handed 310
Helix 74	74	K	101	107	Right-handed alpha
Helix 75	75	K	143	160	Right-handed alpha
Helix 76	76	L	25	29	Right-handed alpha
Helix 77	77	L	44	56	Right-handed alpha
Helix 78	78	L	56	62	Right-handed alpha
Helix 79	79	L	74	85	Right-handed alpha
Helix 80	80	L	85	90	Right-handed alpha
Helix 81	81	L	101	107	Right-handed alpha
Helix 82	82	L	143	160	Right-handed alpha
Helix 83	83	M	26	28	Right-handed 310
Helix 84	84	M	44	56	Right-handed alpha
Helix 85	85	M	56	63	Right-handed alpha
Helix 86	86	M	74	85	Right-handed alpha
Helix 87	87	M	85	90	Right-handed alpha
Helix 88	88	M	101	107	Right-handed alpha
Helix 89	89	M	143	160	Right-handed alpha
Helix 90	90	N	26	28	Right-handed 310
Helix 91	91	N	44	56	Right-handed alpha
Helix 92	92	N	56	63	Right-handed alpha
Helix 93	93	N	74	83	Right-handed alpha
Helix 94	94	N	85	90	Right-handed alpha
Helix 95	95	N	101	107	Right-handed alpha
Helix 96	96	N	143	160	Right-handed alpha
Helix 97	97	O	26	28	Right-handed 310
Helix 98	98	O	44	55	Right-handed alpha
Helix 99	99	O	56	63	Right-handed alpha
Helix 100	100	O	74	85	Right-handed alpha
Helix 101	101	O	85	90	Right-handed alpha
Helix 102	102	O	101	107	Right-handed alpha
Helix 103	103	O	143	160	Right-handed alpha
Helix 104	104	P	26	29	Right-handed 310
Helix 105	105	P	44	56	Right-handed alpha
Helix 106	106	P	56	63	Right-handed alpha
Helix 107	107	P	74	85	Right-handed alpha
Helix 108	108	P	85	90	Right-handed alpha
Helix 109	109	P	101	107	Right-handed alpha
Helix 110	110	P	143	160	Right-handed alpha
Helix 111	111	P	179	183	Right-handed 310
Helix 112	112	Q	44	56	Right-handed alpha
Helix 113	113	Q	56	63	Right-handed alpha
Helix 114	114	Q	74	85	Right-handed alpha
Helix 115	115	Q	85	90	Right-handed alpha
Helix 116	116	Q	101	107	Right-handed alpha
Helix 117	117	Q	143	160	Right-handed alpha
Helix 118	118	R	25	29	Right-handed alpha
Helix 119	119	R	44	56	Right-handed alpha
Helix 120	120	R	56	63	Right-handed alpha
Helix 121	121	R	74	85	Right-handed alpha
Helix 122	122	R	87	91	Right-handed 310
Helix 123	123	R	101	107	Right-handed alpha
Helix 124	124	R	143	159	Right-handed alpha
Helix 125	125	S	25	29	Right-handed alpha
Helix 126	126	S	44	63	Right-handed alpha
Helix 127	127	S	74	85	Right-handed alpha
Helix 128	128	S	87	91	Right-handed 310
Helix 129	129	S	101	107	Right-handed alpha
Helix 130	130	S	143	159	Right-handed alpha
Helix 131	131	T	26	28	Right-handed 310
Helix 132	132	T	44	63	Right-handed alpha
Helix 133	133	T	74	85	Right-handed alpha
Helix 134	134	T	85	90	Right-handed alpha
Helix 135	135	T	101	107	Right-handed alpha
Helix 136	136	T	143	159	Right-handed alpha

There are 10 sheets in PDB entry 1N8J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 14 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	24	first strand
Strand 2	A	11	16	anti-parallel
Strand 3	A	94	97	anti-parallel
Strand 4	A	65	71	parallel
Strand 5	A	32	37	parallel
Strand 6	A	119	124	anti-parallel
Strand 7	A	130	136	anti-parallel
Strand 8	B	130	136	anti-parallel
Strand 9	B	119	124	anti-parallel
Strand 10	B	32	37	anti-parallel
Strand 11	B	65	71	parallel
Strand 12	B	94	97	parallel
Strand 13	B	11	16	anti-parallel
Strand 14	B	19	24	anti-parallel

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There are 14 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	24	first strand
Strand 2	C	11	16	anti-parallel
Strand 3	C	94	97	anti-parallel
Strand 4	C	65	71	parallel
Strand 5	C	32	37	parallel
Strand 6	C	119	124	anti-parallel
Strand 7	C	130	136	anti-parallel
Strand 8	D	130	136	anti-parallel
Strand 9	D	119	124	anti-parallel
Strand 10	D	32	37	anti-parallel
Strand 11	D	65	71	parallel
Strand 12	D	94	97	parallel
Strand 13	D	11	16	anti-parallel
Strand 14	D	19	24	anti-parallel

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There are 14 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	19	24	first strand
Strand 2	E	11	16	anti-parallel
Strand 3	E	94	97	anti-parallel
Strand 4	E	65	71	parallel
Strand 5	E	32	37	parallel
Strand 6	E	119	124	anti-parallel
Strand 7	E	130	136	anti-parallel
Strand 8	F	130	136	anti-parallel
Strand 9	F	119	124	anti-parallel
Strand 10	F	32	37	anti-parallel
Strand 11	F	65	71	parallel
Strand 12	F	94	97	parallel
Strand 13	F	11	16	anti-parallel
Strand 14	F	19	24	anti-parallel

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There are 14 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	19	24	first strand
Strand 2	G	11	16	anti-parallel
Strand 3	G	94	97	anti-parallel
Strand 4	G	65	71	parallel
Strand 5	G	32	37	parallel
Strand 6	G	119	124	anti-parallel
Strand 7	G	130	136	anti-parallel
Strand 8	H	130	136	anti-parallel
Strand 9	H	119	124	anti-parallel
Strand 10	H	32	37	anti-parallel
Strand 11	H	65	71	parallel
Strand 12	H	94	97	parallel
Strand 13	H	11	16	anti-parallel
Strand 14	H	19	24	anti-parallel

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There are 14 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	19	24	first strand
Strand 2	I	11	16	anti-parallel
Strand 3	I	94	97	anti-parallel
Strand 4	I	65	71	parallel
Strand 5	I	32	37	parallel
Strand 6	I	119	124	anti-parallel
Strand 7	I	130	136	anti-parallel
Strand 8	J	130	136	anti-parallel
Strand 9	J	119	124	anti-parallel
Strand 10	J	32	37	anti-parallel
Strand 11	J	65	71	parallel
Strand 12	J	94	97	parallel
Strand 13	J	11	16	anti-parallel
Strand 14	J	19	24	anti-parallel

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There are 14 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	19	24	first strand
Strand 2	K	11	16	anti-parallel
Strand 3	K	94	97	anti-parallel
Strand 4	K	65	71	parallel
Strand 5	K	32	37	parallel
Strand 6	K	119	124	anti-parallel
Strand 7	K	130	136	anti-parallel
Strand 8	L	130	136	anti-parallel
Strand 9	L	119	124	anti-parallel
Strand 10	L	32	37	anti-parallel
Strand 11	L	65	71	parallel
Strand 12	L	94	97	parallel
Strand 13	L	11	15	anti-parallel
Strand 14	L	20	24	anti-parallel

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There are 14 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	19	24	first strand
Strand 2	M	11	16	anti-parallel
Strand 3	M	94	97	anti-parallel
Strand 4	M	65	71	parallel
Strand 5	M	32	37	parallel
Strand 6	M	119	124	anti-parallel
Strand 7	M	130	136	anti-parallel
Strand 8	N	130	136	anti-parallel
Strand 9	N	119	124	anti-parallel
Strand 10	N	32	37	anti-parallel
Strand 11	N	65	71	parallel
Strand 12	N	94	97	parallel
Strand 13	N	11	16	anti-parallel
Strand 14	N	19	24	anti-parallel

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There are 14 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	19	24	first strand
Strand 2	O	11	16	anti-parallel
Strand 3	O	94	97	anti-parallel
Strand 4	O	65	71	parallel
Strand 5	O	32	37	parallel
Strand 6	O	119	124	anti-parallel
Strand 7	O	130	136	anti-parallel
Strand 8	P	130	136	anti-parallel
Strand 9	P	119	124	anti-parallel
Strand 10	P	32	37	anti-parallel
Strand 11	P	65	71	parallel
Strand 12	P	94	97	parallel
Strand 13	P	11	16	anti-parallel
Strand 14	P	19	24	anti-parallel

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There are 14 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	19	24	first strand
Strand 2	Q	11	16	anti-parallel
Strand 3	Q	94	97	anti-parallel
Strand 4	Q	65	71	parallel
Strand 5	Q	32	37	parallel
Strand 6	Q	119	124	anti-parallel
Strand 7	Q	130	136	anti-parallel
Strand 8	R	130	136	anti-parallel
Strand 9	R	119	124	anti-parallel
Strand 10	R	32	37	anti-parallel
Strand 11	R	65	71	parallel
Strand 12	R	94	97	parallel
Strand 13	R	11	16	anti-parallel
Strand 14	R	19	24	anti-parallel

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There are 14 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	19	24	first strand
Strand 2	S	11	16	anti-parallel
Strand 3	S	94	97	anti-parallel
Strand 4	S	65	71	parallel
Strand 5	S	32	37	parallel
Strand 6	S	119	124	anti-parallel
Strand 7	S	130	136	anti-parallel
Strand 8	T	130	136	anti-parallel
Strand 9	T	119	124	anti-parallel
Strand 10	T	32	37	anti-parallel
Strand 11	T	65	71	parallel
Strand 12	T	95	97	parallel
Strand 13	T	11	15	anti-parallel
Strand 14	T	20	24	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1N8J

Analysis of interatomic Contacts of Structural Units in PDB entry:
1N8J