Analysis of interatomic Contacts of Structural Units in PDB entry:
1N8T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1N8T entry

There are 2 chains in PDB entry 1N8T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1GLN 557
B
 ALA 1GLN 557
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 75 helices in PDB entry 1N8T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 20Right-handed alpha
Helix 2
2
A
21 23Right-handed 310
Helix 3
3
A
24 31Right-handed alpha
Helix 4
4
A
34 39Right-handed alpha
Helix 5
5
A
60 74Right-handed alpha
Helix 6
6
A
75 85Right-handed alpha
Helix 7
7
A
98 103Right-handed alpha
Helix 8
8
A
117 137Right-handed alpha
Helix 9
9
A
156 159Right-handed 310
Helix 10
10
A
160 170Right-handed alpha
Helix 11
11
A
171 174Right-handed 310
Helix 12
12
A
188 196Right-handed alpha
Helix 13
13
A
197 198Right-handed 310
Helix 14
14
A
199 201Right-handed 310
Helix 15
15
A
214 230Right-handed alpha
Helix 16
16
A
234 236Right-handed 310
Helix 17
17
A
237 241Right-handed alpha
Helix 18
18
A
248 256Right-handed alpha
Helix 19
19
A
258 260Right-handed 310
Helix 20
20
A
270 274Right-handed 310
Helix 21
21
A
277 279Right-handed 310
Helix 22
22
A
280 309Right-handed alpha
Helix 23
23
A
310 313Right-handed 310
Helix 24
24
A
314 329Right-handed alpha
Helix 25
25
A
341 345Right-handed 310
Helix 26
26
A
346 360Right-handed alpha
Helix 27
27
A
390 397Right-handed alpha
Helix 28
28
A
415 417Right-handed 310
Helix 29
29
A
418 438Right-handed alpha
Helix 30
30
A
440 451Right-handed alpha
Helix 31
31
A
454 462Right-handed alpha
Helix 32
32
A
463 466Right-handed 310
Helix 33
33
A
482 504Right-handed alpha
Helix 34
34
A
511 513Right-handed 310
Helix 35
35
A
514 529Right-handed alpha
Helix 36
36
A
538 552Right-handed alpha
Helix 37
37
B
1 6Right-handed alpha
Helix 38
38
B
6 20Right-handed alpha
Helix 39
39
B
21 23Right-handed 310
Helix 40
40
B
24 32Right-handed alpha
Helix 41
41
B
34 39Right-handed alpha
Helix 42
42
B
60 74Right-handed alpha
Helix 43
43
B
75 86Right-handed alpha
Helix 44
44
B
98 103Right-handed alpha
Helix 45
45
B
117 137Right-handed alpha
Helix 46
46
B
156 159Right-handed 310
Helix 47
47
B
160 170Right-handed alpha
Helix 48
48
B
171 174Right-handed 310
Helix 49
49
B
187 196Right-handed alpha
Helix 50
50
B
197 198Right-handed 310
Helix 51
51
B
199 201Right-handed 310
Helix 52
52
B
214 233Right-handed alpha
Helix 53
53
B
234 236Right-handed 310
Helix 54
54
B
237 241Right-handed alpha
Helix 55
55
B
248 256Right-handed alpha
Helix 56
56
B
258 260Right-handed 310
Helix 57
57
B
270 274Right-handed 310
Helix 58
58
B
277 279Right-handed 310
Helix 59
59
B
280 288Right-handed alpha
Helix 60
60
B
288 309Right-handed alpha
Helix 61
61
B
310 313Right-handed 310
Helix 62
62
B
314 329Right-handed alpha
Helix 63
63
B
341 345Right-handed 310
Helix 64
64
B
346 360Right-handed alpha
Helix 65
65
B
385 389Right-handed 310
Helix 66
66
B
390 397Right-handed alpha
Helix 67
67
B
414 417Right-handed 310
Helix 68
68
B
418 438Right-handed alpha
Helix 69
69
B
440 451Right-handed alpha
Helix 70
70
B
454 462Right-handed alpha
Helix 71
71
B
463 466Right-handed 310
Helix 72
72
B
482 505Right-handed alpha
Helix 73
73
B
511 513Right-handed 310
Helix 74
74
B
514 528Right-handed alpha
Helix 75
75
B
538 553Right-handed alpha
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There are 6 sheets in PDB entry 1N8T. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 44first strand
Strand 2
A
49 53anti-parallel
Strand 3
A
473 480anti-parallel
Strand 4
A
403 410parallel
Strand 5
A
334 339parallel
Strand 6
A
377 379parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 112first strand
Strand 2
A
115 116anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 183first strand
Strand 2
A
150 154parallel
Strand 3
A
203 208parallel
Strand 4
A
242 245parallel
Strand 5
A
262 263parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 44first strand
Strand 2
B
49 53anti-parallel
Strand 3
B
473 480anti-parallel
Strand 4
B
403 410parallel
Strand 5
B
334 339parallel
Strand 6
B
377 379parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 112first strand
Strand 2
B
115 116anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 183first strand
Strand 2
B
150 154parallel
Strand 3
B
203 208parallel
Strand 4
B
242 245parallel
Strand 5
B
262 263parallel
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