Analysis of interatomic Contacts of Structural Units in PDB entry:
1N8Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1N8Z entry

There are 3 chains in PDB entry 1N8Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1	CYS 214
B	GLU 1	PRO 220
C	THR 1	ASN 607

There are 25 helices in PDB entry 1N8Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	79	83	Right-handed 310
Helix 2	2	A	121	126	Right-handed alpha
Helix 3	3	A	150	153	Right-handed 310
Helix 4	4	A	183	188	Right-handed alpha
Helix 5	5	B	28	32	Right-handed 310
Helix 6	6	B	87	91	Right-handed 310
Helix 7	7	B	134	136	Right-handed 310
Helix 8	8	B	163	165	Right-handed 310
Helix 9	9	B	194	196	Right-handed 310
Helix 10	10	B	208	211	Right-handed 310
Helix 11	11	C	16	29	Right-handed alpha
Helix 12	12	C	49	53	Right-handed 310
Helix 13	13	C	85	88	Right-handed 310
Helix 14	14	C	146	151	Right-handed alpha
Helix 15	15	C	152	156	Right-handed 310
Helix 16	16	C	209	213	Right-handed 310
Helix 17	17	C	325	329	Right-handed 310
Helix 18	18	C	338	343	Right-handed 310
Helix 19	19	C	355	359	Right-handed 310
Helix 20	20	C	373	381	Right-handed 310
Helix 21	21	C	400	404	Right-handed 310
Helix 22	22	C	414	417	Right-handed 310
Helix 23	23	C	459	464	Right-handed alpha
Helix 24	24	C	478	485	Right-handed alpha
Helix 25	25	C	493	497	Right-handed 310

There are 21 sheets in PDB entry 1N8Z. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	7	first strand
Strand 2	A	19	25	anti-parallel
Strand 3	A	70	75	anti-parallel
Strand 4	A	62	67	anti-parallel

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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	102	106	parallel
Strand 3	A	84	90	anti-parallel
Strand 4	A	97	98	anti-parallel
Strand 5	A	84	90	anti-parallel
Strand 6	A	33	38	anti-parallel
Strand 7	A	45	49	anti-parallel
Strand 8	A	53	54	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	118	first strand
Strand 2	A	129	139	anti-parallel
Strand 3	A	173	182	anti-parallel
Strand 4	A	159	163	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	148	first strand
Strand 2	A	191	198	anti-parallel
Strand 3	A	205	210	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	68	73	anti-parallel

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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	114	118	parallel
Strand 3	B	92	98	anti-parallel
Strand 4	B	109	110	anti-parallel
Strand 5	B	92	98	anti-parallel
Strand 6	B	34	39	anti-parallel
Strand 7	B	46	51	anti-parallel
Strand 8	B	58	60	anti-parallel

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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	131	first strand
Strand 2	B	142	152	anti-parallel
Strand 3	B	138	139	anti-parallel
Strand 4	B	142	152	anti-parallel
Strand 5	B	183	192	anti-parallel
Strand 6	B	176	177	anti-parallel
Strand 7	B	183	192	anti-parallel
Strand 8	B	170	172	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	161	first strand
Strand 2	B	202	207	anti-parallel
Strand 3	B	212	217	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	5	first strand
Strand 2	C	33	35	parallel
Strand 3	C	57	58	parallel
Strand 4	C	79	80	parallel
Strand 5	C	125	126	parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	41	first strand
Strand 2	C	62	65	parallel
Strand 3	C	90	95	parallel
Strand 4	C	130	134	parallel
Strand 5	C	160	162	parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	236	238	first strand
Strand 2	C	241	243	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	250	252	first strand
Strand 2	C	259	261	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	269	first strand
Strand 2	C	272	274	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	282	283	first strand
Strand 2	C	289	290	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	297	301	first strand
Strand 2	C	307	311	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	347	348	first strand
Strand 2	C	383	384	parallel
Strand 3	C	408	409	parallel
Strand 4	C	438	439	parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	352	354	first strand
Strand 2	C	388	390	parallel
Strand 3	C	419	424	parallel
Strand 4	C	443	447	parallel
Strand 5	C	471	474	parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	512	514	first strand
Strand 2	C	517	519	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	531	534	first strand
Strand 2	C	537	540	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	568	570	first strand
Strand 2	C	573	575	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	593	595	first strand
Strand 2	C	601	603	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1N8Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
1N8Z