Analysis of interatomic Contacts of Structural Units in PDB entry:
1NAY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NAY entry

There are 3 chains in PDB entry 1NAY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 106LEU 161
B
 PRO 207LEU 261
C
 GLY 306LEU 361
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 3 helices in PDB entry 1NAY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
158 160Right-handed 310
Helix 2
2
B
258 261Right-handed 310
Helix 3
3
C
358 361Right-handed 310
Back to top of page

There is 1 sheet ( A) in PDB entry 1NAY.

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 156first strand
Strand 2
A
146 150anti-parallel
Strand 3
B
246 250anti-parallel
Strand 4
C
346 350anti-parallel
Strand 5
C
353 356anti-parallel
Strand 6
C
346 350anti-parallel
Strand 7
A
146 150parallel
Strand 8
B
246 250anti-parallel
Strand 9
B
253 256anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il