Analysis of interatomic Contacts of Structural Units in PDB entry:
1NBD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NBD entry

There is 1 chain in PDB entry 1NBD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 425PRO 638
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 1NBD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
426 433Right-handed alpha
Helix 2
2
A
463 475Right-handed alpha
Helix 3
3
A
498 505Right-handed 310
Helix 4
4
A
523 529Right-handed alpha
Helix 5
5
A
555 565Right-handed alpha
Helix 6
6
A
580 591Right-handed 310
Helix 7
7
A
607 609Right-handed 310
Helix 8
8
A
622 636Right-handed 310
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There is 1 sheet ( A) in PDB entry 1NBD.

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 515first strand
Strand 2
A
487 492parallel
Strand 3
A
538 542parallel
Strand 4
A
568 573parallel
Strand 5
A
602 606parallel
Strand 6
A
614 617anti-parallel
Strand 7
A
454 457anti-parallel
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