Analysis of interatomic Contacts of Structural Units in PDB entry:
1NBM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NBM entry

There are 8 chains in PDB entry 1NBM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 24ALA 510
B
 ASP 24ALA 510
C
 ALA 19ALA 510
D
 THR 9GLU 475
E
 THR 9ILE 310
E
 VAL 312ALA 474
F
 THR 9ALA 474
G
 ALA 1LEU 272
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are121 helices in PDB entry 1NBM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
79 81Right-handed 310
Helix 2
2
A
101 103Right-handed 310
Helix 3
3
A
151 156Right-handed alpha
Helix 4
4
A
175 191Right-handed alpha
Helix 5
5
A
210 222Right-handed alpha
Helix 6
6
A
225 228Right-handed 310
Helix 7
7
A
240 259Right-handed alpha
Helix 8
8
A
271 284Right-handed alpha
Helix 9
9
A
291 293Right-handed 310
Helix 10
10
A
298 308Right-handed alpha
Helix 11
11
A
314 316Right-handed 310
Helix 12
12
A
337 345Right-handed alpha
Helix 13
13
A
354 359Right-handed alpha
Helix 14
14
A
375 378Right-handed 310
Helix 15
15
A
381 404Right-handed alpha
Helix 16
16
A
412 427Right-handed alpha
Helix 17
17
A
438 449Right-handed alpha
Helix 18
18
A
458 475Right-handed alpha
Helix 19
19
A
477 486Right-handed alpha
Helix 20
20
A
491 508Right-handed alpha
Helix 21
21
B
79 81Right-handed 310
Helix 22
22
B
101 103Right-handed 310
Helix 23
23
B
151 156Right-handed alpha
Helix 24
24
B
175 190Right-handed alpha
Helix 25
25
B
210 222Right-handed alpha
Helix 26
26
B
225 228Right-handed 310
Helix 27
27
B
240 260Right-handed alpha
Helix 28
28
B
271 284Right-handed alpha
Helix 29
29
B
291 293Right-handed 310
Helix 30
30
B
298 308Right-handed alpha
Helix 31
31
B
314 316Right-handed 310
Helix 32
32
B
337 343Right-handed alpha
Helix 33
33
B
354 358Right-handed alpha
Helix 34
34
B
376 378Right-handed 310
Helix 35
35
B
381 384Right-handed alpha
Helix 36
36
B
387 399Right-handed alpha
Helix 37
37
B
412 428Right-handed alpha
Helix 38
38
B
438 450Right-handed alpha
Helix 39
39
B
458 474Right-handed alpha
Helix 40
40
B
477 486Right-handed alpha
Helix 41
41
B
491 507Right-handed alpha
Helix 42
42
C
79 81Right-handed 310
Helix 43
43
C
101 103Right-handed 310
Helix 44
44
C
151 156Right-handed alpha
Helix 45
45
C
175 190Right-handed alpha
Helix 46
46
C
195 197Right-handed 310
Helix 47
47
C
210 222Right-handed alpha
Helix 48
48
C
226 228Right-handed 310
Helix 49
49
C
240 260Right-handed alpha
Helix 50
50
C
271 284Right-handed alpha
Helix 51
51
C
291 293Right-handed 310
Helix 52
52
C
298 308Right-handed alpha
Helix 53
53
C
314 316Right-handed 310
Helix 54
54
C
337 344Right-handed alpha
Helix 55
55
C
354 358Right-handed alpha
Helix 56
56
C
367 369Right-handed 310
Helix 57
57
C
375 378Right-handed 310
Helix 58
58
C
381 386Right-handed alpha
Helix 59
59
C
390 403Right-handed alpha
Helix 60
60
C
412 428Right-handed alpha
Helix 61
61
C
438 449Right-handed alpha
Helix 62
62
C
458 474Right-handed alpha
Helix 63
63
C
477 486Right-handed alpha
Helix 64
64
C
491 508Right-handed alpha
Helix 65
65
D
88 90Right-handed 310
Helix 66
66
D
123 125Right-handed 310
Helix 67
67
D
138 143Right-handed alpha
Helix 68
68
D
162 173Right-handed alpha
Helix 69
69
D
190 202Right-handed alpha
Helix 70
70
D
226 244Right-handed alpha
Helix 71
71
D
258 272Right-handed 310
Helix 72
72
D
278 280Right-handed 310
Helix 73
73
D
285 295Right-handed alpha
Helix 74
74
D
313 315Right-handed 310
Helix 75
75
D
320 328Right-handed alpha
Helix 76
76
D
337 342Right-handed alpha
Helix 77
77
D
365 388Right-handed alpha
Helix 78
78
D
398 414Right-handed alpha
Helix 79
79
D
420 425Right-handed 310
Helix 80
80
D
434 445Right-handed alpha
Helix 81
81
D
454 456Right-handed 310
Helix 82
82
D
463 472Right-handed alpha
Helix 83
83
E
88 90Right-handed 310
Helix 84
84
E
123 125Right-handed 310
Helix 85
85
E
138 143Right-handed alpha
Helix 86
86
E
162 177Right-handed alpha
Helix 87
87
E
190 203Right-handed alpha
Helix 88
88
E
226 247Right-handed alpha
Helix 89
89
E
259 271Right-handed alpha
Helix 90
90
E
278 280Right-handed 310
Helix 91
91
E
283 295Right-handed 310
Helix 92
92
E
313 315Right-handed 310
Helix 93
93
E
320 328Right-handed alpha
Helix 94
94
E
337 341Right-handed alpha
Helix 95
95
E
360 363Right-handed alpha
Helix 96
96
E
365 388Right-handed alpha
Helix 97
97
E
398 414Right-handed alpha
Helix 98
98
E
419 425Right-handed 310
Helix 99
99
E
434 446Right-handed alpha
Helix 100
100
E
454 457Right-handed 310
Helix 101
101
E
463 473Right-handed alpha
Helix 102
102
F
138 143Right-handed alpha
Helix 103
103
F
162 172Right-handed alpha
Helix 104
104
F
190 203Right-handed alpha
Helix 105
105
F
226 246Right-handed alpha
Helix 106
106
F
258 272Right-handed 310
Helix 107
107
F
278 280Right-handed 310
Helix 108
108
F
285 295Right-handed alpha
Helix 109
109
F
313 315Right-handed 310
Helix 110
110
F
320 328Right-handed alpha
Helix 111
111
F
337 342Right-handed alpha
Helix 112
112
F
360 363Right-handed alpha
Helix 113
113
F
365 391Right-handed alpha
Helix 114
114
F
398 413Right-handed alpha
Helix 115
115
F
419 425Right-handed 310
Helix 116
116
F
434 445Right-handed alpha
Helix 117
117
F
454 457Right-handed 310
Helix 118
118
F
463 473Right-handed alpha
Helix 119
119
G
3 43Right-handed alpha
Helix 120
120
G
82 89Right-handed alpha
Helix 121
121
G
210 269Right-handed alpha
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There are 20 sheets in PDB entry 1NBM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
28 35anti-parallel
Strand 3
A
38 43anti-parallel
Strand 4
A
70 75anti-parallel
Strand 5
A
60 67anti-parallel
Strand 6
A
51 54anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 99first strand
Strand 2
A
125 128anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 109first strand
Strand 2
A
229 234parallel
Strand 3
A
200 206parallel
Strand 4
A
263 269parallel
Strand 5
A
320 325parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
349 352first strand
Strand 2
A
166 169parallel
Strand 3
A
326 328parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 30first strand
Strand 2
B
87 90anti-parallel
Strand 3
B
52 55anti-parallel
Strand 4
B
60 66anti-parallel
Strand 5
B
71 75anti-parallel
Strand 6
B
38 43anti-parallel
Strand 7
B
29 35anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 99first strand
Strand 2
B
125 128anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 109first strand
Strand 2
B
229 234parallel
Strand 3
B
200 206parallel
Strand 4
B
263 269parallel
Strand 5
B
320 325parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
349 352first strand
Strand 2
B
166 169parallel
Strand 3
B
326 328parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
28 30first strand
Strand 2
C
87 90anti-parallel
Strand 3
C
52 55anti-parallel
Strand 4
C
60 66anti-parallel
Strand 5
C
71 75anti-parallel
Strand 6
C
38 43anti-parallel
Strand 7
C
29 35anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
96 99first strand
Strand 2
C
125 128anti-parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
107 109first strand
Strand 2
C
229 234parallel
Strand 3
C
200 206parallel
Strand 4
C
263 269parallel
Strand 5
C
320 328parallel
Strand 6
C
164 169parallel
Strand 7
C
349 352parallel
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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 12first strand
Strand 2
D
74 77anti-parallel
Strand 3
D
35 38anti-parallel
Strand 4
D
46 51anti-parallel
Strand 5
D
57 62anti-parallel
Strand 6
D
20 25anti-parallel
Strand 7
D
11 17anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
83 85first strand
Strand 2
D
113 115anti-parallel
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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
331 334first strand
Strand 2
D
152 156parallel
Strand 3
D
304 311parallel
Strand 4
D
251 256parallel
Strand 5
D
181 186parallel
Strand 6
D
215 220parallel
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There are 7 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 12first strand
Strand 2
E
74 77anti-parallel
Strand 3
E
35 38anti-parallel
Strand 4
E
46 51anti-parallel
Strand 5
E
57 62anti-parallel
Strand 6
E
20 24anti-parallel
Strand 7
E
12 17anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
83 86first strand
Strand 2
E
112 115anti-parallel
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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
331 334first strand
Strand 2
E
151 155parallel
Strand 3
E
303 309parallel
Strand 4
E
250 255parallel
Strand 5
E
181 188parallel
Strand 6
E
215 221parallel
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There are 7 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
10 12first strand
Strand 2
F
74 77anti-parallel
Strand 3
F
35 38anti-parallel
Strand 4
F
46 52anti-parallel
Strand 5
F
57 62anti-parallel
Strand 6
F
20 24anti-parallel
Strand 7
F
12 17anti-parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
83 86first strand
Strand 2
F
112 115anti-parallel
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There are 6 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
331 334first strand
Strand 2
F
151 156parallel
Strand 3
F
304 311parallel
Strand 4
F
251 256parallel
Strand 5
F
181 186parallel
Strand 6
F
215 220parallel
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