Analysis of interatomic Contacts of Structural Units in PDB entry:
1ND7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1ND7 entry

There is 1 chain in PDB entry 1ND7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 544GLU 917
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 1ND7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
546 561Right-handed alpha
Helix 2
2
A
575 586Right-handed alpha
Helix 3
3
A
588 594Right-handed 310
Helix 4
4
A
609 624Right-handed alpha
Helix 5
5
A
625 629Right-handed 310
Helix 6
6
A
645 650Right-handed 310
Helix 7
7
A
652 670Right-handed alpha
Helix 8
8
A
679 687Right-handed alpha
Helix 9
9
A
692 698Right-handed alpha
Helix 10
10
A
700 712Right-handed alpha
Helix 11
11
A
742 746Right-handed 310
Helix 12
12
A
752 767Right-handed alpha
Helix 13
13
A
769 784Right-handed alpha
Helix 14
14
A
785 790Right-handed 310
Helix 15
15
A
793 803Right-handed alpha
Helix 16
16
A
808 815Right-handed alpha
Helix 17
17
A
825 838Right-handed alpha
Helix 18
18
A
839 852Right-handed alpha
Helix 19
19
A
860 863Right-handed 310
Helix 20
20
A
889 891Right-handed 310
Helix 21
21
A
901 915Right-handed alpha
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There are 5 sheets in PDB entry 1ND7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
566 571first strand
Strand 2
A
595 600parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
631 633first strand
Strand 2
A
641 643anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
725 726first strand
Strand 2
A
737 738anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
816 819first strand
Strand 2
A
873 876parallel
Strand 3
A
893 895parallel
Strand 4
A
886 888anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
865 866first strand
Strand 2
A
869 870anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il