Analysis of interatomic Contacts of Structural Units in PDB entry:
1NDE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NDE entry

There is 1 chain in PDB entry 1NDE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 261LEU 500
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 1NDE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
266 275Right-handed alpha
Helix 2
2
A
290 316Right-handed alpha
Helix 3
3
A
318 322Right-handed 310
Helix 4
4
A
323 347Right-handed alpha
Helix 5
7
A
393 407Right-handed alpha
Helix 6
8
A
421 444Right-handed alpha
Helix 7
9
A
447 478Right-handed alpha
Helix 8
10
A
488 490Right-handed 310
Helix 9
11
A
491 497Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1NDE.

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 355first strand
Strand 2
A
361 363anti-parallel
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