Analysis of interatomic Contacts of Structural Units in PDB entry:
1NE4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NE4 entry

There is 1 chain in PDB entry 1NE4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 109SER 376
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 1NE4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
119 132Right-handed alpha
Helix 2
2
A
133 138Right-handed 310
Helix 3
3
A
140 151Right-handed alpha
Helix 4
4
A
199 206Right-handed alpha
Helix 5
5
A
226 233Right-handed alpha
Helix 6
6
A
233 250Right-handed alpha
Helix 7
7
A
251 257Right-handed 310
Helix 8
8
A
258 269Right-handed alpha
Helix 9
9
A
323 330Right-handed alpha
Helix 10
10
A
350 357Right-handed alpha
Helix 11
11
A
360 367Right-handed alpha
Helix 12
12
A
368 371Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 1NE4. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 156first strand
Strand 2
A
219 225anti-parallel
Strand 3
A
171 177anti-parallel
Strand 4
A
197 198anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 163first strand
Strand 2
A
212 215anti-parallel
Strand 3
A
180 184anti-parallel
Strand 4
A
187 192anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 274first strand
Strand 2
A
336 349anti-parallel
Strand 3
A
279 281anti-parallel
Strand 4
A
336 349anti-parallel
Strand 5
A
289 302anti-parallel
Strand 6
A
321 322anti-parallel
Strand 7
A
289 302anti-parallel
Strand 8
A
311 316anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il