Analysis of interatomic Contacts of Structural Units in PDB entry:
1NE7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NE7 entry

There are 6 chains in PDB entry 1NE7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 281
B
 MET 1GLU 274
C
 MET 1GLU 274
D
 MET 1GLU 274
E
 MET 1GLU 274
F
 MET 1GLU 274
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are102 helices in PDB entry 1NE7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 28Right-handed alpha
Helix 2
2
A
42 58Right-handed alpha
Helix 3
3
A
84 93Right-handed alpha
Helix 4
4
A
94 97Right-handed 310
Helix 5
5
A
100 102Right-handed 310
Helix 6
6
A
113 128Right-handed alpha
Helix 7
7
A
163 171Right-handed alpha
Helix 8
8
A
172 174Right-handed 310
Helix 9
9
A
177 181Right-handed 310
Helix 10
10
A
189 195Right-handed alpha
Helix 11
11
A
205 207Right-handed 310
Helix 12
12
A
208 217Right-handed alpha
Helix 13
13
A
224 232Right-handed 310
Helix 14
14
A
242 245Right-handed 310
Helix 15
15
A
248 258Right-handed alpha
Helix 16
16
A
258 263Right-handed alpha
Helix 17
17
A
264 266Right-handed 310
Helix 18
18
B
8 28Right-handed alpha
Helix 19
19
B
42 58Right-handed alpha
Helix 20
20
B
84 93Right-handed alpha
Helix 21
21
B
94 97Right-handed 310
Helix 22
22
B
100 102Right-handed 310
Helix 23
23
B
113 128Right-handed alpha
Helix 24
24
B
163 171Right-handed alpha
Helix 25
25
B
172 175Right-handed 310
Helix 26
26
B
177 181Right-handed 310
Helix 27
27
B
189 195Right-handed alpha
Helix 28
28
B
205 207Right-handed 310
Helix 29
29
B
208 217Right-handed alpha
Helix 30
30
B
224 232Right-handed 310
Helix 31
31
B
242 245Right-handed 310
Helix 32
32
B
248 258Right-handed alpha
Helix 33
33
B
258 263Right-handed alpha
Helix 34
34
B
264 266Right-handed 310
Helix 35
35
C
8 28Right-handed alpha
Helix 36
36
C
42 58Right-handed alpha
Helix 37
37
C
84 93Right-handed alpha
Helix 38
38
C
94 97Right-handed 310
Helix 39
39
C
100 102Right-handed 310
Helix 40
40
C
113 128Right-handed alpha
Helix 41
41
C
163 171Right-handed alpha
Helix 42
42
C
172 174Right-handed 310
Helix 43
43
C
177 181Right-handed 310
Helix 44
44
C
189 195Right-handed alpha
Helix 45
45
C
205 207Right-handed 310
Helix 46
46
C
208 217Right-handed alpha
Helix 47
47
C
224 232Right-handed 310
Helix 48
48
C
242 245Right-handed 310
Helix 49
49
C
248 258Right-handed alpha
Helix 50
50
C
258 263Right-handed alpha
Helix 51
51
C
264 266Right-handed 310
Helix 52
52
D
8 28Right-handed alpha
Helix 53
53
D
45 58Right-handed alpha
Helix 54
54
D
84 93Right-handed alpha
Helix 55
55
D
94 97Right-handed 310
Helix 56
56
D
100 102Right-handed 310
Helix 57
57
D
113 128Right-handed alpha
Helix 58
58
D
163 171Right-handed alpha
Helix 59
59
D
172 174Right-handed 310
Helix 60
60
D
177 181Right-handed 310
Helix 61
61
D
189 195Right-handed alpha
Helix 62
62
D
205 207Right-handed 310
Helix 63
63
D
208 217Right-handed alpha
Helix 64
64
D
224 232Right-handed 310
Helix 65
65
D
242 245Right-handed 310
Helix 66
66
D
248 257Right-handed alpha
Helix 67
67
D
258 263Right-handed alpha
Helix 68
68
D
264 266Right-handed 310
Helix 69
69
E
8 28Right-handed alpha
Helix 70
70
E
45 58Right-handed alpha
Helix 71
71
E
84 93Right-handed alpha
Helix 72
72
E
94 97Right-handed 310
Helix 73
73
E
100 102Right-handed 310
Helix 74
74
E
113 128Right-handed alpha
Helix 75
75
E
163 171Right-handed alpha
Helix 76
76
E
172 175Right-handed 310
Helix 77
77
E
177 181Right-handed 310
Helix 78
78
E
189 195Right-handed alpha
Helix 79
79
E
205 207Right-handed 310
Helix 80
80
E
208 217Right-handed alpha
Helix 81
81
E
224 232Right-handed 310
Helix 82
82
E
242 245Right-handed 310
Helix 83
83
E
248 257Right-handed alpha
Helix 84
84
E
258 263Right-handed alpha
Helix 85
85
E
264 266Right-handed 310
Helix 86
86
F
8 28Right-handed alpha
Helix 87
87
F
42 58Right-handed alpha
Helix 88
88
F
84 93Right-handed alpha
Helix 89
89
F
94 97Right-handed 310
Helix 90
90
F
100 102Right-handed 310
Helix 91
91
F
113 128Right-handed alpha
Helix 92
92
F
163 171Right-handed alpha
Helix 93
93
F
172 174Right-handed 310
Helix 94
94
F
177 181Right-handed 310
Helix 95
95
F
189 195Right-handed alpha
Helix 96
96
F
205 207Right-handed 310
Helix 97
97
F
208 217Right-handed alpha
Helix 98
98
F
224 232Right-handed 310
Helix 99
99
F
242 245Right-handed 310
Helix 100
100
F
248 257Right-handed alpha
Helix 101
101
F
258 263Right-handed alpha
Helix 102
102
F
264 266Right-handed 310
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There are 12 sheets in PDB entry 1NE7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
235 240parallel
Strand 3
A
199 203parallel
Strand 4
A
133 136parallel
Strand 5
A
35 39parallel
Strand 6
A
66 70parallel
Strand 7
A
104 105parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 74first strand
Strand 2
A
184 187anti-parallel
Strand 3
A
158 161anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 6first strand
Strand 2
B
235 240parallel
Strand 3
B
199 203parallel
Strand 4
B
133 136parallel
Strand 5
B
35 39parallel
Strand 6
B
66 70parallel
Strand 7
B
104 105parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 74first strand
Strand 2
B
184 187anti-parallel
Strand 3
B
158 161anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 6first strand
Strand 2
C
235 240parallel
Strand 3
C
198 203parallel
Strand 4
C
133 136parallel
Strand 5
C
35 39parallel
Strand 6
C
66 70parallel
Strand 7
C
104 105parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
72 74first strand
Strand 2
C
184 187anti-parallel
Strand 3
C
158 161anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 6first strand
Strand 2
D
235 240parallel
Strand 3
D
198 203parallel
Strand 4
D
133 137parallel
Strand 5
D
35 39parallel
Strand 6
D
66 70parallel
Strand 7
D
104 105parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
72 74first strand
Strand 2
D
184 187anti-parallel
Strand 3
D
158 161anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
2 6first strand
Strand 2
E
235 240parallel
Strand 3
E
199 203parallel
Strand 4
E
133 136parallel
Strand 5
E
35 39parallel
Strand 6
E
66 70parallel
Strand 7
E
104 105parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
72 74first strand
Strand 2
E
184 187anti-parallel
Strand 3
E
158 161anti-parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
2 6first strand
Strand 2
F
235 240parallel
Strand 3
F
198 203parallel
Strand 4
F
133 136parallel
Strand 5
F
35 39parallel
Strand 6
F
66 70parallel
Strand 7
F
104 105parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
72 74first strand
Strand 2
F
184 187anti-parallel
Strand 3
F
158 161anti-parallel
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