Analysis of interatomic Contacts of Structural Units in PDB entry:
1NEZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NEZ entry

There are 4 chains in PDB entry 1NEZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1TRP 274
B
 ILE 1MET 99
G
 ALA 4ALA 125
H
 LYS 1GLN 120
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 1NEZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
49 54Right-handed alpha
Helix 2
2
A
56 77Right-handed alpha
Helix 3
3
A
77 85Right-handed alpha
Helix 4
4
A
137 150Right-handed alpha
Helix 5
5
A
151 162Right-handed alpha
Helix 6
6
A
162 179Right-handed alpha
Helix 7
7
A
253 255Right-handed 310
Helix 8
8
G
70 73Right-handed 310
Helix 9
9
G
93 96Right-handed 310
Helix 10
10
H
68 72Right-handed 310
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There are 13 sheets in PDB entry 1NEZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 47first strand
Strand 2
A
31 37anti-parallel
Strand 3
A
22 28anti-parallel
Strand 4
A
2 13anti-parallel
Strand 5
A
93 104anti-parallel
Strand 6
A
109 118anti-parallel
Strand 7
A
121 126anti-parallel
Strand 8
A
133 135anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 193first strand
Strand 2
A
199 208anti-parallel
Strand 3
A
241 249anti-parallel
Strand 4
A
228 230anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 193first strand
Strand 2
A
199 208anti-parallel
Strand 3
A
241 249anti-parallel
Strand 4
A
234 235anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 223first strand
Strand 2
A
214 219anti-parallel
Strand 3
A
257 262anti-parallel
Strand 4
A
270 273anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 11first strand
Strand 2
B
21 30anti-parallel
Strand 3
B
62 70anti-parallel
Strand 4
B
50 51anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 11first strand
Strand 2
B
21 30anti-parallel
Strand 3
B
62 70anti-parallel
Strand 4
B
55 56anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
36 41anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
91 94anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
6 10first strand
Strand 2
G
22 29anti-parallel
Strand 3
G
84 89anti-parallel
Strand 4
G
75 80anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
63 65first strand
Strand 2
G
51 56anti-parallel
Strand 3
G
36 42anti-parallel
Strand 4
G
98 106anti-parallel
Strand 5
G
109 112anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
63 65first strand
Strand 2
G
51 56anti-parallel
Strand 3
G
36 42anti-parallel
Strand 4
G
98 106anti-parallel
Strand 5
G
116 120anti-parallel
Strand 6
G
14 16parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
6 10first strand
Strand 2
H
22 29anti-parallel
Strand 3
H
84 89anti-parallel
Strand 4
H
75 80anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
63 65first strand
Strand 2
H
51 56anti-parallel
Strand 3
H
36 42anti-parallel
Strand 4
H
98 106anti-parallel
Strand 5
H
109 112anti-parallel
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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
63 65first strand
Strand 2
H
51 56anti-parallel
Strand 3
H
36 42anti-parallel
Strand 4
H
98 106anti-parallel
Strand 5
H
116 119anti-parallel
Strand 6
H
14 15parallel
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