Analysis of interatomic Contacts of Structural Units in PDB entry:
1NF7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NF7 entry

There are 2 chains in PDB entry 1NF7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 10PHE 514
B
 THR 10PHE 514
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 1NF7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 25Right-handed alpha
Helix 2
2
A
31 33Right-handed 310
Helix 3
3
A
45 49Right-handed 310
Helix 4
4
A
76 86Right-handed alpha
Helix 5
5
A
96 109Right-handed alpha
Helix 6
6
A
160 165Right-handed alpha
Helix 7
7
A
193 204Right-handed alpha
Helix 8
8
A
255 266Right-handed alpha
Helix 9
9
A
280 294Right-handed alpha
Helix 10
10
A
306 317Right-handed alpha
Helix 11
11
A
332 337Right-handed alpha
Helix 12
12
A
342 355Right-handed alpha
Helix 13
13
A
356 358Right-handed 310
Helix 14
14
A
369 379Right-handed alpha
Helix 15
15
A
387 391Right-handed 310
Helix 16
16
A
452 472Right-handed alpha
Helix 17
17
A
475 485Right-handed alpha
Helix 18
18
A
494 502Right-handed alpha
Helix 19
19
B
19 25Right-handed alpha
Helix 20
20
B
31 33Right-handed 310
Helix 21
21
B
45 49Right-handed 310
Helix 22
22
B
76 86Right-handed alpha
Helix 23
23
B
96 109Right-handed alpha
Helix 24
24
B
160 165Right-handed alpha
Helix 25
25
B
193 204Right-handed alpha
Helix 26
26
B
255 266Right-handed alpha
Helix 27
27
B
280 294Right-handed alpha
Helix 28
28
B
306 317Right-handed alpha
Helix 29
29
B
332 337Right-handed alpha
Helix 30
30
B
342 355Right-handed alpha
Helix 31
31
B
356 358Right-handed 310
Helix 32
32
B
369 379Right-handed alpha
Helix 33
33
B
387 391Right-handed 310
Helix 34
34
B
452 472Right-handed alpha
Helix 35
35
B
475 485Right-handed alpha
Helix 36
36
B
494 502Right-handed alpha
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There are 10 sheets in PDB entry 1NF7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 37first strand
Strand 2
A
490 492anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 54first strand
Strand 2
A
60 61anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 67first strand
Strand 2
A
383 386parallel
Strand 3
A
361 364parallel
Strand 4
A
320 323parallel
Strand 5
A
298 304parallel
Strand 6
A
270 273parallel
Strand 7
A
247 250parallel
Strand 8
A
90 91parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 211first strand
Strand 2
A
220 221anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
409 412first strand
Strand 2
A
444 447anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 37first strand
Strand 2
B
490 492anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 54first strand
Strand 2
B
60 61anti-parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 67first strand
Strand 2
B
383 386parallel
Strand 3
B
361 364parallel
Strand 4
B
320 323parallel
Strand 5
B
298 304parallel
Strand 6
B
270 273parallel
Strand 7
B
247 250parallel
Strand 8
B
90 91parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
210 211first strand
Strand 2
B
220 221anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
409 412first strand
Strand 2
B
444 447anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il