Analysis of interatomic Contacts of Structural Units in PDB entry:
1NF8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NF8 entry

There is 1 chain in PDB entry 1NF8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1NF8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 18Right-handed 310
Helix 2
2
A
28 30Right-handed 310
Helix 3
3
A
40 45Right-handed alpha
Helix 4
4
A
48 70Right-handed alpha
Helix 5
5
A
83 88Right-handed alpha
Helix 6
6
A
90 95Right-handed alpha
Helix 7
7
A
101 106Right-handed alpha
Helix 8
8
A
108 112Right-handed 310
Helix 9
9
A
132 140Right-handed alpha
Helix 10
10
A
154 166Right-handed alpha
Helix 11
11
A
181 196Right-handed alpha
Helix 12
12
A
201 207Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1NF8.

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 121first strand
Strand 2
A
72 77parallel
Strand 3
A
32 37parallel
Strand 4
A
144 150parallel
Strand 5
A
169 178parallel
Strand 6
A
198 200parallel
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