Analysis of interatomic Contacts of Structural Units in PDB entry:
1NFT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NFT entry

There is 1 chain in PDB entry 1NFT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4ARG 332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 1NFT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 27Right-handed alpha
Helix 2
2
A
42 50Right-handed alpha
Helix 3
3
A
61 68Right-handed alpha
Helix 4
4
A
106 108Right-handed 310
Helix 5
5
A
126 134Right-handed alpha
Helix 6
6
A
148 154Right-handed alpha
Helix 7
7
A
168 171Right-handed 310
Helix 8
8
A
190 199Right-handed alpha
Helix 9
9
A
212 216Right-handed alpha
Helix 10
10
A
218 223Right-handed 310
Helix 11
11
A
236 241Right-handed 310
Helix 12
12
A
260 274Right-handed alpha
Helix 13
13
A
293 295Right-handed 310
Helix 14
14
A
316 320Right-handed alpha
Helix 15
15
A
322 330Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 1NFT. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 11first strand
Strand 2
A
33 38parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
251 254anti-parallel
Strand 3
A
75 82anti-parallel
Strand 4
A
304 309anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 235first strand
Strand 2
A
224 227anti-parallel
Strand 3
A
94 99anti-parallel
Strand 4
A
205 209anti-parallel
Strand 5
A
113 116parallel
Strand 6
A
158 161parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 94first strand
Strand 2
A
245 248anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il