Analysis of interatomic Contacts of Structural Units in PDB entry:
1NG0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NG0 entry

There are 3 chains in PDB entry 1NG0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 62LEU 253
B
 ASP 62LEU 253
C
 VAL 36LEU 253
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 1NG0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
92 95Right-handed alpha
Helix 2
2
A
96 103Right-handed alpha
Helix 3
3
A
144 151Right-handed alpha
Helix 4
4
A
163 169Right-handed 310
Helix 5
5
A
186 189Right-handed 310
Helix 6
6
A
206 213Right-handed alpha
Helix 7
7
A
248 251Right-handed 310
Helix 8
8
B
92 95Right-handed alpha
Helix 9
9
B
96 103Right-handed alpha
Helix 10
10
B
144 151Right-handed alpha
Helix 11
11
B
163 169Right-handed 310
Helix 12
12
B
186 189Right-handed 310
Helix 13
13
B
206 213Right-handed alpha
Helix 14
14
B
248 251Right-handed 310
Helix 15
15
C
92 95Right-handed alpha
Helix 16
16
C
96 103Right-handed alpha
Helix 17
17
C
144 151Right-handed alpha
Helix 18
18
C
163 169Right-handed 310
Helix 19
19
C
186 189Right-handed 310
Helix 20
20
C
206 213Right-handed alpha
Helix 21
21
C
248 251Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 1NG0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 66first strand
Strand 2
A
230 244anti-parallel
Strand 3
A
69 78anti-parallel
Strand 4
A
230 244anti-parallel
Strand 5
A
106 120anti-parallel
Strand 6
A
194 196anti-parallel
Strand 7
A
106 120anti-parallel
Strand 8
A
180 184anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 90first strand
Strand 2
A
216 223anti-parallel
Strand 3
A
128 134anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 66first strand
Strand 2
B
230 244anti-parallel
Strand 3
B
69 78anti-parallel
Strand 4
B
230 244anti-parallel
Strand 5
B
106 120anti-parallel
Strand 6
B
194 196anti-parallel
Strand 7
B
106 120anti-parallel
Strand 8
B
180 184anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 90first strand
Strand 2
B
216 223anti-parallel
Strand 3
B
128 134anti-parallel
Strand 4
C
46 53anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
62 66first strand
Strand 2
C
230 244anti-parallel
Strand 3
C
69 78anti-parallel
Strand 4
C
230 244anti-parallel
Strand 5
C
106 120anti-parallel
Strand 6
C
194 196anti-parallel
Strand 7
C
106 120anti-parallel
Strand 8
C
180 184anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
86 90first strand
Strand 2
C
216 223anti-parallel
Strand 3
C
128 134anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il