Analysis of interatomic Contacts of Structural Units in PDB entry:
1NJ8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1NJ8 entry

There are 4 chains in PDB entry 1NJ8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 0	TYR 455
B	MET 0	TYR 455
C	MET 0	TYR 455
D	MET 0	TYR 455

There are 62 helices in PDB entry 1NJ8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	2	14	Right-handed alpha
Helix 2	2	A	30	51	Right-handed alpha
Helix 3	3	A	64	71	Right-handed alpha
Helix 4	4	A	74	80	Right-handed 310
Helix 5	5	A	102	112	Right-handed alpha
Helix 6	6	A	159	182	Right-handed alpha
Helix 7	7	A	225	231	Right-handed alpha
Helix 8	8	A	254	265	Right-handed alpha
Helix 9	9	A	291	308	Right-handed alpha
Helix 10	10	A	320	331	Right-handed alpha
Helix 11	11	A	340	346	Right-handed alpha
Helix 12	12	A	366	393	Right-handed alpha
Helix 13	13	A	401	409	Right-handed alpha
Helix 14	14	A	421	425	Right-handed 310
Helix 15	15	A	426	434	Right-handed alpha
Helix 16	16	B	2	14	Right-handed alpha
Helix 17	17	B	30	50	Right-handed alpha
Helix 18	18	B	64	70	Right-handed alpha
Helix 19	19	B	77	81	Right-handed 310
Helix 20	20	B	102	114	Right-handed alpha
Helix 21	21	B	116	120	Right-handed 310
Helix 22	22	B	159	180	Right-handed alpha
Helix 23	23	B	225	231	Right-handed alpha
Helix 24	24	B	254	265	Right-handed alpha
Helix 25	25	B	292	308	Right-handed alpha
Helix 26	26	B	320	331	Right-handed alpha
Helix 27	27	B	340	346	Right-handed alpha
Helix 28	28	B	366	392	Right-handed alpha
Helix 29	29	B	401	410	Right-handed alpha
Helix 30	30	B	421	425	Right-handed 310
Helix 31	31	B	426	434	Right-handed alpha
Helix 32	32	C	2	14	Right-handed alpha
Helix 33	33	C	30	51	Right-handed alpha
Helix 34	34	C	64	71	Right-handed alpha
Helix 35	35	C	74	80	Right-handed 310
Helix 36	36	C	102	112	Right-handed alpha
Helix 37	37	C	159	182	Right-handed alpha
Helix 38	38	C	225	231	Right-handed alpha
Helix 39	39	C	254	265	Right-handed alpha
Helix 40	40	C	291	308	Right-handed alpha
Helix 41	41	C	320	331	Right-handed alpha
Helix 42	42	C	340	346	Right-handed alpha
Helix 43	43	C	366	393	Right-handed alpha
Helix 44	44	C	401	409	Right-handed alpha
Helix 45	45	C	421	425	Right-handed 310
Helix 46	46	C	426	434	Right-handed alpha
Helix 47	47	D	2	14	Right-handed alpha
Helix 48	48	D	30	50	Right-handed alpha
Helix 49	49	D	64	70	Right-handed alpha
Helix 50	50	D	77	81	Right-handed 310
Helix 51	51	D	102	114	Right-handed alpha
Helix 52	52	D	116	120	Right-handed 310
Helix 53	53	D	159	180	Right-handed alpha
Helix 54	54	D	225	231	Right-handed alpha
Helix 55	55	D	254	265	Right-handed alpha
Helix 56	56	D	292	308	Right-handed alpha
Helix 57	57	D	320	331	Right-handed alpha
Helix 58	58	D	340	346	Right-handed alpha
Helix 59	59	D	366	392	Right-handed alpha
Helix 60	60	D	401	410	Right-handed alpha
Helix 61	61	D	421	425	Right-handed 310
Helix 62	62	D	426	434	Right-handed alpha

There are 24 sheets in PDB entry 1NJ8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	55	first strand
Strand 2	A	124	128	parallel
Strand 3	A	150	157	anti-parallel
Strand 4	A	246	252	anti-parallel
Strand 5	A	214	224	anti-parallel
Strand 6	A	201	208	anti-parallel
Strand 7	A	186	190	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	63	first strand
Strand 2	A	91	98	anti-parallel
Strand 3	A	82	86	anti-parallel
Strand 4	B	83	87	anti-parallel
Strand 5	B	90	91	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	236	first strand
Strand 2	A	242	244	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	314	first strand
Strand 2	A	281	285	parallel
Strand 3	A	335	339	parallel
Strand 4	A	348	353	anti-parallel
Strand 5	A	359	363	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	396	first strand
Strand 2	A	415	419	parallel
Strand 3	A	447	452	anti-parallel
Strand 4	A	437	442	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	18	first strand
Strand 2	B	28	29	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	55	first strand
Strand 2	B	122	131	parallel
Strand 3	B	146	157	anti-parallel
Strand 4	B	246	247	anti-parallel

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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	55	first strand
Strand 2	B	122	131	parallel
Strand 3	B	146	157	anti-parallel
Strand 4	B	250	252	anti-parallel
Strand 5	B	214	222	anti-parallel
Strand 6	B	201	208	anti-parallel
Strand 7	B	186	187	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	63	first strand
Strand 2	B	96	98	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	236	first strand
Strand 2	B	242	244	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	314	first strand
Strand 2	B	281	284	parallel
Strand 3	B	335	338	parallel
Strand 4	B	348	353	anti-parallel
Strand 5	B	361	363	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	394	396	first strand
Strand 2	B	415	417	parallel
Strand 3	B	448	452	anti-parallel
Strand 4	B	437	441	anti-parallel

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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	55	first strand
Strand 2	C	124	128	parallel
Strand 3	C	150	157	anti-parallel
Strand 4	C	246	252	anti-parallel
Strand 5	C	214	224	anti-parallel
Strand 6	C	201	208	anti-parallel
Strand 7	C	186	190	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	63	first strand
Strand 2	C	91	98	anti-parallel
Strand 3	C	82	86	anti-parallel
Strand 4	D	83	87	anti-parallel
Strand 5	D	90	91	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	234	236	first strand
Strand 2	C	242	244	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	314	first strand
Strand 2	C	281	285	parallel
Strand 3	C	335	339	parallel
Strand 4	C	348	353	anti-parallel
Strand 5	C	359	363	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	394	396	first strand
Strand 2	C	415	419	parallel
Strand 3	C	447	452	anti-parallel
Strand 4	C	437	442	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	18	first strand
Strand 2	D	28	29	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	55	first strand
Strand 2	D	122	131	parallel
Strand 3	D	146	157	anti-parallel
Strand 4	D	246	247	anti-parallel

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There are 7 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	55	first strand
Strand 2	D	122	131	parallel
Strand 3	D	146	157	anti-parallel
Strand 4	D	250	252	anti-parallel
Strand 5	D	214	222	anti-parallel
Strand 6	D	201	208	anti-parallel
Strand 7	D	186	187	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	63	first strand
Strand 2	D	96	98	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	236	first strand
Strand 2	D	242	244	anti-parallel

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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	312	314	first strand
Strand 2	D	281	284	parallel
Strand 3	D	335	338	parallel
Strand 4	D	348	353	anti-parallel
Strand 5	D	361	363	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	394	396	first strand
Strand 2	D	415	417	parallel
Strand 3	D	448	452	anti-parallel
Strand 4	D	437	441	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1NJ8

Analysis of interatomic Contacts of Structural Units in PDB entry:
1NJ8