Analysis of interatomic Contacts of Structural Units in PDB entry:
1NJF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NJF entry

There are 4 chains in PDB entry 1NJF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 5THR 243
B
 VAL 5THR 243
C
 VAL 5THR 243
D
 VAL 5THR 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 56 helices in PDB entry 1NJF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 10Right-handed alpha
Helix 2
2
A
14 18Right-handed 310
Helix 3
3
A
21 34Right-handed alpha
Helix 4
4
A
50 64Right-handed alpha
Helix 5
5
A
76 85Right-handed alpha
Helix 6
6
A
100 110Right-handed alpha
Helix 7
7
A
127 131Right-handed 310
Helix 8
8
A
132 145Right-handed alpha
Helix 9
9
A
158 162Right-handed 310
Helix 10
10
A
163 168Right-handed alpha
Helix 11
11
A
179 195Right-handed alpha
Helix 12
12
A
199 210Right-handed alpha
Helix 13
13
A
213 228Right-handed alpha
Helix 14
14
A
233 242Right-handed alpha
Helix 15
15
B
5 10Right-handed alpha
Helix 16
16
B
14 18Right-handed 310
Helix 17
17
B
21 34Right-handed alpha
Helix 18
18
B
50 64Right-handed alpha
Helix 19
19
B
76 85Right-handed alpha
Helix 20
20
B
100 110Right-handed alpha
Helix 21
21
B
127 131Right-handed 310
Helix 22
22
B
132 145Right-handed alpha
Helix 23
23
B
158 162Right-handed 310
Helix 24
24
B
163 168Right-handed alpha
Helix 25
25
B
179 195Right-handed alpha
Helix 26
26
B
199 210Right-handed alpha
Helix 27
27
B
213 228Right-handed alpha
Helix 28
28
B
233 242Right-handed alpha
Helix 29
29
C
5 10Right-handed alpha
Helix 30
30
C
14 18Right-handed 310
Helix 31
31
C
21 35Right-handed alpha
Helix 32
32
C
50 64Right-handed alpha
Helix 33
33
C
76 84Right-handed alpha
Helix 34
34
C
101 110Right-handed alpha
Helix 35
35
C
128 131Right-handed 310
Helix 36
36
C
132 145Right-handed alpha
Helix 37
37
C
158 162Right-handed 310
Helix 38
38
C
163 168Right-handed alpha
Helix 39
39
C
179 195Right-handed alpha
Helix 40
40
C
199 210Right-handed alpha
Helix 41
41
C
213 228Right-handed alpha
Helix 42
42
C
233 242Right-handed alpha
Helix 43
43
D
5 10Right-handed alpha
Helix 44
44
D
14 18Right-handed 310
Helix 45
45
D
21 34Right-handed alpha
Helix 46
46
D
50 64Right-handed alpha
Helix 47
47
D
76 84Right-handed alpha
Helix 48
48
D
100 110Right-handed alpha
Helix 49
49
D
128 131Right-handed 310
Helix 50
50
D
132 145Right-handed alpha
Helix 51
51
D
158 162Right-handed 310
Helix 52
52
D
163 168Right-handed alpha
Helix 53
53
D
179 195Right-handed alpha
Helix 54
54
D
199 210Right-handed alpha
Helix 55
55
D
213 228Right-handed alpha
Helix 56
56
D
233 242Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 1NJF. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 94first strand
Strand 2
A
121 126parallel
Strand 3
A
150 156parallel
Strand 4
A
40 44parallel
Strand 5
A
171 174parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 94first strand
Strand 2
B
121 126parallel
Strand 3
B
150 156parallel
Strand 4
B
40 44parallel
Strand 5
B
171 174parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
90 94first strand
Strand 2
C
121 126parallel
Strand 3
C
150 156parallel
Strand 4
C
40 44parallel
Strand 5
C
171 174parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
90 94first strand
Strand 2
D
121 126parallel
Strand 3
D
150 156parallel
Strand 4
D
40 44parallel
Strand 5
D
171 174parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il