Analysis of interatomic Contacts of Structural Units in PDB entry:
1NJG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NJG entry

There are 2 chains in PDB entry 1NJG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 4THR 243
B
 VAL 5THR 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 1NJG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 10Right-handed alpha
Helix 2
2
A
14 18Right-handed 310
Helix 3
3
A
21 35Right-handed alpha
Helix 4
4
A
50 64Right-handed alpha
Helix 5
5
A
76 84Right-handed alpha
Helix 6
6
A
97 99Right-handed 310
Helix 7
7
A
100 110Right-handed alpha
Helix 8
8
A
127 131Right-handed 310
Helix 9
9
A
132 145Right-handed alpha
Helix 10
10
A
158 162Right-handed 310
Helix 11
11
A
163 168Right-handed alpha
Helix 12
12
A
179 194Right-handed alpha
Helix 13
13
A
199 211Right-handed alpha
Helix 14
14
A
213 226Right-handed alpha
Helix 15
15
A
233 241Right-handed alpha
Helix 16
16
B
5 10Right-handed alpha
Helix 17
17
B
14 18Right-handed 310
Helix 18
18
B
21 34Right-handed alpha
Helix 19
19
B
50 64Right-handed alpha
Helix 20
20
B
76 84Right-handed alpha
Helix 21
21
B
100 109Right-handed alpha
Helix 22
22
B
128 131Right-handed 310
Helix 23
23
B
132 145Right-handed alpha
Helix 24
24
B
158 162Right-handed 310
Helix 25
25
B
163 168Right-handed alpha
Helix 26
26
B
179 195Right-handed alpha
Helix 27
27
B
199 210Right-handed alpha
Helix 28
28
B
213 228Right-handed alpha
Helix 29
29
B
233 242Right-handed alpha
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There are 2 sheets in PDB entry 1NJG. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 94first strand
Strand 2
A
121 126parallel
Strand 3
A
150 156parallel
Strand 4
A
40 44parallel
Strand 5
A
171 174parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 94first strand
Strand 2
B
121 126parallel
Strand 3
B
150 156parallel
Strand 4
B
40 44parallel
Strand 5
B
171 174parallel
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