Analysis of interatomic Contacts of Structural Units in PDB entry:
1NJR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NJR entry

There is 1 chain in PDB entry 1NJR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 16ILE 279
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1NJR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 36Right-handed alpha
Helix 2
2
A
53 63Right-handed alpha
Helix 3
3
A
88 98Right-handed alpha
Helix 4
4
A
99 110Right-handed alpha
Helix 5
5
A
126 130Right-handed 310
Helix 6
6
A
161 166Right-handed alpha
Helix 7
7
A
166 180Right-handed alpha
Helix 8
8
A
201 218Right-handed alpha
Helix 9
9
A
219 222Right-handed 310
Helix 10
10
A
223 235Right-handed alpha
Helix 11
11
A
239 243Right-handed 310
Helix 12
12
A
244 255Right-handed alpha
Helix 13
13
A
257 263Right-handed alpha
Helix 14
14
A
270 274Right-handed 310
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There is 1 sheet ( A) in PDB entry 1NJR.

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 51first strand
Strand 2
A
18 23parallel
Strand 3
A
187 190parallel
Strand 4
A
73 77parallel
Strand 5
A
140 145parallel
Strand 6
A
121 124anti-parallel
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