Analysis of interatomic Contacts of Structural Units in PDB entry:
1NJV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NJV entry

There are 2 chains in PDB entry 1NJV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 228
B
 MET 229GLY 456
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1NJV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 20Right-handed alpha
Helix 2
2
A
24 34Right-handed alpha
Helix 3
3
A
42 63Right-handed alpha
Helix 4
4
A
64 67Right-handed 310
Helix 5
5
A
78 91Right-handed alpha
Helix 6
6
A
111 129Right-handed alpha
Helix 7
7
A
187 195Right-handed alpha
Helix 8
8
B
239 244Right-handed alpha
Helix 9
9
B
249 251Right-handed 310
Helix 10
10
B
252 266Right-handed alpha
Helix 11
11
B
270 292Right-handed alpha
Helix 12
12
B
306 319Right-handed alpha
Helix 13
13
B
341 351Right-handed alpha
Helix 14
14
B
352 354Right-handed 310
Helix 15
15
B
415 423Right-handed alpha
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There are 4 sheets in PDB entry 1NJV. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 77first strand
Strand 2
A
108 110anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 100first strand
Strand 2
A
134 141parallel
Strand 3
A
144 152anti-parallel
Strand 4
A
207 214anti-parallel
Strand 5
A
197 203anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
303 305first strand
Strand 2
B
336 338anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
325 328first strand
Strand 2
B
362 369parallel
Strand 3
B
372 377anti-parallel
Strand 4
B
438 442anti-parallel
Strand 5
B
425 428anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il