Analysis of interatomic Contacts of Structural Units in PDB entry:
1NKP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NKP entry

There are 8 chains in PDB entry 1NKP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
F
 C 101 C 119
G
 C 301 C 319
H
 C 601 C 619
J
 C 801 C 819
A
 GLY 897CYS 984
B
 ASP 202CYS 284
D
 MET 499LEU 581
E
 ARG 704CYS 784
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1NKP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
897 926Right-handed alpha
Helix 2
2
A
927 932Right-handed 310
Helix 3
3
A
938 982Right-handed alpha
Helix 4
4
B
202 227Right-handed alpha
Helix 5
5
B
228 233Right-handed 310
Helix 6
6
B
238 280Right-handed alpha
Helix 7
7
D
499 526Right-handed alpha
Helix 8
8
D
527 532Right-handed 310
Helix 9
9
D
538 581Right-handed alpha
Helix 10
10
E
704 727Right-handed alpha
Helix 11
11
E
728 733Right-handed 310
Helix 12
12
E
738 780Right-handed alpha
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There are no sheets in PDB entry 1NKP
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il