Analysis of interatomic Contacts of Structural Units in PDB entry:
1NKT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NKT entry

There are 2 chains in PDB entry 1NKT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP -15VAL 835
B
 ASP -15VAL 835
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 79 helices in PDB entry 1NKT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-4 8Right-handed alpha
Helix 2
2
A
11 27Right-handed alpha
Helix 3
3
A
27 33Right-handed alpha
Helix 4
4
A
35 52Right-handed alpha
Helix 5
5
A
58 79Right-handed alpha
Helix 6
6
A
83 95Right-handed alpha
Helix 7
7
A
106 111Right-handed alpha
Helix 8
8
A
111 120Right-handed alpha
Helix 9
9
A
131 149Right-handed alpha
Helix 10
10
A
161 171Right-handed alpha
Helix 11
11
A
178 189Right-handed alpha
Helix 12
12
A
193 197Right-handed 310
Helix 13
13
A
209 215Right-handed alpha
Helix 14
14
A
216 220Right-handed 310
Helix 15
15
A
231 245Right-handed alpha
Helix 16
16
A
263 275Right-handed alpha
Helix 17
17
A
286 301Right-handed alpha
Helix 18
18
A
333 342Right-handed alpha
Helix 19
19
A
357 363Right-handed alpha
Helix 20
20
A
375 377Right-handed 310
Helix 21
21
A
378 387Right-handed alpha
Helix 22
22
A
411 429Right-handed alpha
Helix 23
23
A
439 453Right-handed alpha
Helix 24
24
A
464 474Right-handed alpha
Helix 25
25
A
499 511Right-handed alpha
Helix 26
26
A
518 537Right-handed alpha
Helix 27
27
A
538 547Right-handed alpha
Helix 28
28
A
560 570Right-handed alpha
Helix 29
29
A
571 571Right-handed 310
Helix 30
30
A
572 576Right-handed 310
Helix 31
31
A
588 594Right-handed alpha
Helix 32
32
A
595 606Right-handed alpha
Helix 33
33
A
616 664Right-handed alpha
Helix 34
34
A
668 687Right-handed alpha
Helix 35
35
A
697 709Right-handed alpha
Helix 36
36
A
735 759Right-handed alpha
Helix 37
37
A
761 794Right-handed alpha
Helix 38
38
A
795 797Right-handed 310
Helix 39
39
A
802 833Right-handed alpha
Helix 40
40
B
-5 8Right-handed alpha
Helix 41
41
B
11 27Right-handed alpha
Helix 42
42
B
27 33Right-handed alpha
Helix 43
43
B
35 52Right-handed alpha
Helix 44
44
B
58 79Right-handed alpha
Helix 45
45
B
83 95Right-handed alpha
Helix 46
46
B
106 111Right-handed alpha
Helix 47
47
B
111 120Right-handed alpha
Helix 48
48
B
131 149Right-handed alpha
Helix 49
49
B
161 171Right-handed alpha
Helix 50
50
B
178 189Right-handed alpha
Helix 51
51
B
193 197Right-handed 310
Helix 52
52
B
209 215Right-handed alpha
Helix 53
53
B
216 220Right-handed 310
Helix 54
54
B
231 242Right-handed alpha
Helix 55
55
B
243 245Right-handed 310
Helix 56
56
B
263 274Right-handed alpha
Helix 57
57
B
286 300Right-handed alpha
Helix 58
58
B
333 342Right-handed alpha
Helix 59
59
B
357 363Right-handed alpha
Helix 60
60
B
375 377Right-handed 310
Helix 61
61
B
378 387Right-handed alpha
Helix 62
62
B
411 430Right-handed alpha
Helix 63
63
B
439 453Right-handed alpha
Helix 64
64
B
464 474Right-handed alpha
Helix 65
65
B
499 510Right-handed alpha
Helix 66
66
B
518 537Right-handed alpha
Helix 67
67
B
538 547Right-handed alpha
Helix 68
68
B
560 569Right-handed alpha
Helix 69
69
B
570 571Right-handed 310
Helix 70
70
B
572 576Right-handed 310
Helix 71
71
B
588 593Right-handed alpha
Helix 72
72
B
595 606Right-handed alpha
Helix 73
73
B
616 665Right-handed alpha
Helix 74
74
B
668 689Right-handed alpha
Helix 75
75
B
698 707Right-handed alpha
Helix 76
76
B
714 718Right-handed 310
Helix 77
77
B
735 759Right-handed alpha
Helix 78
78
B
761 794Right-handed alpha
Helix 79
79
B
802 833Right-handed alpha
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There are 12 sheets in PDB entry 1NKT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 155first strand
Strand 2
A
173 177parallel
Strand 3
A
125 129parallel
Strand 4
A
204 207parallel
Strand 5
A
367 372parallel
Strand 6
A
97 100parallel
Strand 7
A
389 392parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 227first strand
Strand 2
A
350 356anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 254first strand
Strand 2
A
259 262anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 309first strand
Strand 2
A
314 316anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 460first strand
Strand 2
A
481 485parallel
Strand 3
A
433 437parallel
Strand 4
A
550 554parallel
Strand 5
A
578 585parallel
Strand 6
A
402 403parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 460first strand
Strand 2
A
481 485parallel
Strand 3
A
433 437parallel
Strand 4
A
550 554parallel
Strand 5
A
578 585parallel
Strand 6
A
407 409parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 155first strand
Strand 2
B
173 177parallel
Strand 3
B
125 129parallel
Strand 4
B
204 207parallel
Strand 5
B
367 372parallel
Strand 6
B
98 100parallel
Strand 7
B
390 392parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 227first strand
Strand 2
B
350 356anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
251 254first strand
Strand 2
B
259 262anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
307 309first strand
Strand 2
B
314 316anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
458 460first strand
Strand 2
B
481 485parallel
Strand 3
B
433 437parallel
Strand 4
B
550 554parallel
Strand 5
B
578 585parallel
Strand 6
B
402 403parallel
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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
458 460first strand
Strand 2
B
481 485parallel
Strand 3
B
433 437parallel
Strand 4
B
550 554parallel
Strand 5
B
578 585parallel
Strand 6
B
407 409parallel
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