Analysis of interatomic Contacts of Structural Units in PDB entry:
1NL3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NL3 entry

There are 2 chains in PDB entry 1NL3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP -15VAL 835
B
 ASP -15VAL 835
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 79 helices in PDB entry 1NL3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-5 5Right-handed alpha
Helix 2
2
A
6 9Right-handed 310
Helix 3
3
A
11 26Right-handed alpha
Helix 4
4
A
27 33Right-handed alpha
Helix 5
5
A
35 51Right-handed alpha
Helix 6
6
A
58 79Right-handed alpha
Helix 7
7
A
83 95Right-handed alpha
Helix 8
8
A
106 111Right-handed alpha
Helix 9
9
A
111 120Right-handed alpha
Helix 10
10
A
131 142Right-handed alpha
Helix 11
11
A
142 149Right-handed alpha
Helix 12
12
A
161 171Right-handed alpha
Helix 13
13
A
177 189Right-handed alpha
Helix 14
14
A
193 197Right-handed 310
Helix 15
15
A
209 215Right-handed alpha
Helix 16
16
A
216 220Right-handed 310
Helix 17
17
A
231 245Right-handed alpha
Helix 18
18
A
263 275Right-handed alpha
Helix 19
19
A
286 301Right-handed alpha
Helix 20
20
A
333 342Right-handed alpha
Helix 21
21
A
357 363Right-handed alpha
Helix 22
22
A
375 377Right-handed 310
Helix 23
23
A
378 387Right-handed alpha
Helix 24
24
A
411 429Right-handed alpha
Helix 25
25
A
439 452Right-handed alpha
Helix 26
26
A
464 473Right-handed alpha
Helix 27
27
A
499 511Right-handed alpha
Helix 28
28
A
518 547Right-handed alpha
Helix 29
29
A
560 569Right-handed alpha
Helix 30
30
A
570 571Right-handed 310
Helix 31
31
A
572 576Right-handed 310
Helix 32
32
A
588 593Right-handed alpha
Helix 33
33
A
595 606Right-handed alpha
Helix 34
34
A
616 664Right-handed alpha
Helix 35
35
A
668 688Right-handed alpha
Helix 36
36
A
697 709Right-handed alpha
Helix 37
37
A
714 719Right-handed 310
Helix 38
38
A
735 758Right-handed alpha
Helix 39
39
A
761 792Right-handed alpha
Helix 40
40
A
793 796Right-handed 310
Helix 41
41
A
802 833Right-handed alpha
Helix 42
42
B
-4 3Right-handed alpha
Helix 43
43
B
11 26Right-handed alpha
Helix 44
44
B
27 33Right-handed alpha
Helix 45
45
B
40 50Right-handed alpha
Helix 46
46
B
58 79Right-handed alpha
Helix 47
47
B
83 95Right-handed alpha
Helix 48
48
B
106 111Right-handed alpha
Helix 49
49
B
111 120Right-handed alpha
Helix 50
50
B
131 149Right-handed alpha
Helix 51
51
B
161 171Right-handed alpha
Helix 52
52
B
177 189Right-handed alpha
Helix 53
53
B
209 215Right-handed alpha
Helix 54
54
B
216 220Right-handed 310
Helix 55
55
B
231 242Right-handed alpha
Helix 56
56
B
243 245Right-handed 310
Helix 57
57
B
263 274Right-handed alpha
Helix 58
58
B
286 301Right-handed alpha
Helix 59
59
B
333 342Right-handed alpha
Helix 60
60
B
357 363Right-handed alpha
Helix 61
61
B
375 377Right-handed 310
Helix 62
62
B
378 387Right-handed alpha
Helix 63
63
B
411 430Right-handed alpha
Helix 64
64
B
439 452Right-handed alpha
Helix 65
65
B
464 474Right-handed alpha
Helix 66
66
B
499 511Right-handed alpha
Helix 67
67
B
518 547Right-handed alpha
Helix 68
68
B
560 569Right-handed alpha
Helix 69
69
B
570 571Right-handed 310
Helix 70
70
B
572 576Right-handed 310
Helix 71
71
B
588 593Right-handed alpha
Helix 72
72
B
595 606Right-handed alpha
Helix 73
73
B
616 665Right-handed alpha
Helix 74
74
B
668 689Right-handed alpha
Helix 75
75
B
697 709Right-handed alpha
Helix 76
76
B
715 719Right-handed 310
Helix 77
77
B
734 759Right-handed alpha
Helix 78
78
B
761 794Right-handed alpha
Helix 79
79
B
802 833Right-handed alpha
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There are 12 sheets in PDB entry 1NL3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 155first strand
Strand 2
A
173 176parallel
Strand 3
A
125 128parallel
Strand 4
A
204 207parallel
Strand 5
A
367 372parallel
Strand 6
A
98 100parallel
Strand 7
A
390 392parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 227first strand
Strand 2
A
350 356anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 254first strand
Strand 2
A
259 262anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 309first strand
Strand 2
A
314 316anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 460first strand
Strand 2
A
481 485parallel
Strand 3
A
433 437parallel
Strand 4
A
550 554parallel
Strand 5
A
578 585parallel
Strand 6
A
402 403parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 460first strand
Strand 2
A
481 485parallel
Strand 3
A
433 437parallel
Strand 4
A
550 554parallel
Strand 5
A
578 585parallel
Strand 6
A
407 409parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 155first strand
Strand 2
B
173 176parallel
Strand 3
B
126 128parallel
Strand 4
B
204 207parallel
Strand 5
B
367 372parallel
Strand 6
B
98 100parallel
Strand 7
B
390 392parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 227first strand
Strand 2
B
350 356anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
251 254first strand
Strand 2
B
259 262anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
307 309first strand
Strand 2
B
314 316anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
458 460first strand
Strand 2
B
481 485parallel
Strand 3
B
433 437parallel
Strand 4
B
550 554parallel
Strand 5
B
578 585parallel
Strand 6
B
402 403parallel
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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
458 460first strand
Strand 2
B
481 485parallel
Strand 3
B
433 437parallel
Strand 4
B
550 554parallel
Strand 5
B
578 585parallel
Strand 6
B
407 409parallel
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